Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01958 ATGATGTGTTTGCGCTATTTCCTTTTCGCAATGGCGGCAGTTTCTCAGACGACAGTTCATGCCTCTCCGGCTTCCCTCTACGTTGGCGACCTTCATCCTGATATCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCCACTGGACGCTCTCTCTCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGCAACCAATGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCAATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGATTCTGCAAATGCTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTCGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAACGCTGATGTTAAATATACCAATTTGTATGTGAAAAATCTTGACCCAGAGATTGGGGAAGAGCATTTGCAGGAAAAGTTCTCTGACTTTGGAAAAATTTCCAGCATGATTATTTCACGGGATGAGAATGGAGTGTCAAGGGGTTTTGGCTTTATAAACTTTGACAACTCTGATGATGCCAAGCGGGCTTTGGAAACACTTAATGGATCTCAACTTGGTTCTAAGGTTATCTACATCGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGACATTACGAAGAGAAATGCAAGGAGCAAGTGTTAAAATACAAGTCTCTTTCTTCTCCTAACAAACAATATATCTTCTACCGCGGATCAAATGTGTATGTGAAGAACATTGATGATGATGTTACTGATGAAGAACTAAGAGAACGTTTTAGTCAGTTTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTCGGATTTGTATGCTTCTCCAATCCCGATGAAGCTAAAAGAGCCGTGAACACTTTGCAAGTCTCTCCTAATTGCCTTTCCTTGGACACTGGATACTGTATACCCATAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCTATAGCACAAAGAAAAGAGGACAGACAAATGCAATTGAAGCTTCAGTTTGCACAACGGCTGGCAGGGATACCTGGACCGTCAACTACAATTTTTCCTGGTGGATACCCACCTTATTACTACCCAGCACCAGGTGTTGTTCCACAAGTATCATCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTATGCATCTCCTGCAAGGCCTGGCTTTCAACCTTCACCTGTACCTATTATTCCGAATGTTTCGAGGCAACCCAGGCAGAACAGAGGCAAAATTAATGGACCAATTCTTTCTCATCAAAATGGAGTCCAATCTGTCTCTTATATGCAAAATTCACAAGACGCTAATCAATCAGTAGTCACTGCAAAATCATCTGGCAATCAGCAGGTAAACTGCTCTGGTCTTTCAACGAATTATTCACTTGCCTTCTTATGCCTCAATGGTTTCTGTGGTTATTTATTCTTTCTATCTGTTAGGATCTTTTCAATTTTCTTGTGTTCTGGACTGGAAGGTGCTGATGGTACTAATTTGGACAAATGGACTGGACAGGTTAAGTATGTCCCAAATGCTCGCCCATGCGAAACAAACAAAGCTTCTGGAGCCTCAGCTGCTGCTTTTAATCCTGCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTAGTCCAAAAACGCAAGCCGGACCTTGCTGCGAAAATTACTGGTATGCTTCTGGAGATGGACAACTCGGAATTGCTGCTTCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATTTCAAAGACTAAGCTGTCCAACCAAGACACACTCAGTTTCTTACCAGCTGAGCTTGCATCCCGGGAGAGTATAAATTTTGGTACCGAACATCGGCGAACATCGGCAGGCTGGCCGGCCGATCAACCATCTCTAGATTTCTGGCCTGGACGAGTGTTCTTTCCAGATTTTGCAATGGAAAAGAGGTTGGAGATTATTTCATCCACGTTTATGGGTACCCATGGCCGAAGCAGTGAGAGGAAGAGAGAGAAGACATCATCTTCGCGGAGACGCAGCAGAAGAAGGTCCGACGACTCTGAATCTGATTCCGACGACTCAGATAGCCGCGATTCATCTCCTGTGGCGAGCTCCCGGAAGCGTAGGGAGAGACGCGATGGTAGCAGAAGTAGCCACCGGAATAGGCGACGGAGCTCCTCGCGTGGGCGGGATTCCGGTGATGATAGTTCAAATGATAGTTATGACAGTGATGACGGAGGTCGCAAGAAGATTAAGTCTTCGAGGAAAGTTACCGAAGAGGAAATTAGCGAATACTTGGCCAAGAAAGCGCAGAAAAAGGTCCCATTAGGGTTACGTTTTGTTTCCTTAGCCTTGCGAGTTGCTAAGAAATTGAAGTCACAGACGGTTTCTGGTTATTCTAACGATTCGAATCCATTTGGCGACTCGAATCTGAATGAAAAATTTGTTTGGCGAAAGAAAATTGAGCGTGATGTTACTCAAGGCGTGCCGCTTGATGCCTTTTCAGTGAAGGCTGAGAAAAAAAGACAGAGAGAAAGAATGGCAGAGATTGAAAAGGTGAAAAAAAGGAGGGAGGAAAGGGCTCTTGAAAAAGCACAACATGAGGAAGAAATGGTAGTTCTGGTCAGTTCATATAATCTAAAGTATGGTAGTTTTCTTTCATGGATTAACTCTTTTTTGCTGGCATTGCTAGCTCGAGAACGTGCTCGTGCTGAATTTCAGGACTGGGAGAAAAAGGAAGAAGAGGTAGTATGCGCACTTGTGATTTCATGTTACTCTTATAGGATATTGCATGAGGTTCTCCATTATTTGCTTGTGCCTTTATTGTATATGACCCCTTGGACAATTGCTCAGAGTGAAGTTTTTGGCCTACAGTTTCATTTTGATCAAAGCAAAATCAGATCAGAGATAAGAGTTCGTGATGGCCGTTCGAAGCCTATAGATGTTCTGTCCAAGCAACTGAATGGGTCAGATGATTTTGATATAGTAATTAATGAGCCATACACTGTATTCAAGGTAAATAAATCGCTGGTTATGATGCTTATGGTTGTTTTAGTTGACTTGTGCTTTCTGTTCAGTGTGTCACCGAAGAATTAA 3450 43.59 MMCLRYFLFAMAAVSQTTVHASPASLYVGDLHPDITDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAMEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESLNGFTIGDKQIYVGKFVRKSDRVLANADVKYTNLYVKNLDPEIGEEHLQEKFSDFGKISSMIISRDENGVSRGFGFINFDNSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKSLSSPNKQYIFYRGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQVSPNCLSLDTGYCIPIGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPQVSSRPGLMFQPLGMRPGWRANTYASPARPGFQPSPVPIIPNVSRQPRQNRGKINGPILSHQNGVQSVSYMQNSQDANQSVVTAKSSGNQQVNCSGLSTNYSLAFLCLNGFCGYLFFLSVRIFSIFLCSGLEGADGTNLDKWTGQVKYVPNARPCETNKASGASAAAFNPAVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLSFLPAELASRESINFGTEHRRTSAGWPADQPSLDFWPGRVFFPDFAMEKRLEIISSTFMGTHGRSSERKREKTSSSRRRSRRRSDDSESDSDDSDSRDSSPVASSRKRRERRDGSRSSHRNRRRSSSRGRDSGDDSSNDSYDSDDGGRKKIKSSRKVTEEEISEYLAKKAQKKVPLGLRFVSLALRVAKKLKSQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGVPLDAFSVKAEKKRQRERMAEIEKVKKRREERALEKAQHEEEMVVLVSSYNLKYGSFLSWINSFLLALLARERARAEFQDWEKKEEEVVCALVISCYSYRILHEVLHYLLVPLLYMTPWTIAQSEVFGLQFHFDQSKIRSEIRVRDGRSKPIDVLSKQLNGSDDFDIVINEPYTVFKVNKSLVMMLMVVLVDLCFLFSVSPKN 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30997958 31007051 - Lsi03G019580.1 Lsi03g01958 659708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01958 1149 Coils Coil 958 988 - -
Lsi03g01958 1149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Lsi03g01958 1149 PANTHER POLYADENYLATE-BINDING PROTEIN 18 715 - -
Lsi03g01958 1149 Pfam Conserved mid region of cactin 1076 1124 IPR018816 -
Lsi03g01958 1149 Gene3D - 113 185 IPR012677 -
Lsi03g01958 1149 MobiDBLite consensus disorder prediction 845 877 - -
Lsi03g01958 1149 SMART poly_2 645 708 IPR002004 GO:0003723
Lsi03g01958 1149 CDD RRM2_I_PABPs 110 186 IPR045305 -
Lsi03g01958 1149 Pfam Poly-adenylate binding protein, unique domain 640 705 IPR002004 GO:0003723
Lsi03g01958 1149 SMART rrm2_1 204 276 IPR003954 GO:0003676
Lsi03g01958 1149 SMART rrm2_1 113 185 IPR003954 GO:0003676
Lsi03g01958 1149 SMART rrm1_1 25 98 IPR000504 GO:0003723
Lsi03g01958 1149 SMART rrm1_1 204 276 IPR000504 GO:0003723
Lsi03g01958 1149 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lsi03g01958 1149 SMART rrm1_1 320 389 IPR000504 GO:0003723
Lsi03g01958 1149 MobiDBLite consensus disorder prediction 830 844 - -
Lsi03g01958 1149 SUPERFAMILY RNA-binding domain, RBD 202 380 IPR035979 GO:0003676
Lsi03g01958 1149 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 24 706 IPR006515 GO:0003723
Lsi03g01958 1149 Gene3D - 631 720 - -
Lsi03g01958 1149 Gene3D - 13 112 IPR012677 -
Lsi03g01958 1149 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 633 710 IPR002004 GO:0003723
Lsi03g01958 1149 Gene3D - 292 421 IPR012677 -
Lsi03g01958 1149 PANTHER RNA BINDING PROTEIN 18 715 - -
Lsi03g01958 1149 Coils Coil 275 295 - -
Lsi03g01958 1149 CDD RRM1_I_PABPs 25 103 - -
Lsi03g01958 1149 SUPERFAMILY RNA-binding domain, RBD 24 191 IPR035979 GO:0003676
Lsi03g01958 1149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Lsi03g01958 1149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Lsi03g01958 1149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 380 IPR000504 GO:0003723
Lsi03g01958 1149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Lsi03g01958 1149 MobiDBLite consensus disorder prediction 776 877 - -
Lsi03g01958 1149 Gene3D - 189 291 IPR012677 -
Lsi03g01958 1149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lsi03g01958 1149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 412 IPR000504 GO:0003723
Lsi03g01958 1149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Lsi03g01958 1149 SUPERFAMILY PABC (PABP) domain 600 716 IPR036053 GO:0003723
Lsi03g01958 1149 MobiDBLite consensus disorder prediction 781 829 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01165 Lsi-Chr3:22017206 Lsi03g01958 Lsi-Chr3:30997958 3.67E-10 dispersed
Lsi03g01958 Lsi-Chr3:30997958 Lsi08g00587 Lsi-Chr8:14135174 8.23E-18 dispersed
Lsi10g00027 Lsi-Chr10:443476 Lsi03g01958 Lsi-Chr3:30997958 3.51E-07 dispersed
Lsi03g01958 Lsi-Chr3:30997958 Lsi05g00226 Lsi-Chr5:3013456 2.99E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01958 K13126 - csv:101203793 1111.67