Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01959 ATGGCGAACTCAAAAAACCCACAAAATTCCACCGAAATGCGGGCCTTCTCTTCCTCGATCTTGGCCTTAGCATCCGTCGTTCTGCCGGCGACGGTGGTTTACTGCGGCTTCCCCGTCCCACTTCTCTCTCTGCACAGGGCCTTCCCTTCTTCTCCCCCTGTCCAACTCGAAACCCTCAGAGCTCGGGACCGACTCAGGCATGCCAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTACTCGTCGGGTACCTGGTTTGTGATATTTTCGTCCCTGTGATTCTCTGTTTAGCGGCTGGTAGGTCGTTCAGGAGCGAGCGAGCGAGAGAGAGAGAGGGAGTCAAATTGGGCACTCCCCCAATGGAATTTACGGTGCAGATCGACACTGGAAGCGATATATTGTGGGTCAACTGCAATTCCTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCTAGCTCGTCAAGTTCTTCACTCGTCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACGACTGCAACACAGTGTTTAACTCAGAGTAATCAATGCAGTTACACCTTTCAGTACGGTGATGGAAGTGGAACATCAGGTTATTATGTATCCGAGTCCATGTACTTTGACATGGTTATGGGACATTCAATGATTGCTAACTCTTCAGCTAGTGTTGTTTTTGGTTGTAGCACCTATCAGTCTGGAGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCTGGGGATTTGTCTGTCATATCACAGTTGTCAGCTCGAGGGATAACGCCTAAAGTATTTTCCCATTGTTTAAAGGGAGAAGGAAATGGTGGTGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATATCTGCAAAGCATTGCTGTCAATGGTCAGACACTGCCAATTGATCCATCTGTGTTTGCAACATCAATAAATCGAGGAACTATTGTAGACTCTGGGACCACATTGGCTTACCTTGTCGAAGAAGCTTATACTCCATTTGTCAGTGCTATAACTGCTGCTGTTTCCCAATCTGTAACTCCTACTATTTCAAAGGGCAATCAGTGTTACCTGGTATCCACCAGGTCTGTCTCTACTTCTCACTGTATCAAAAGGGGTCTTGATCTTCAACTAACCCAAGATTTGAATGGGGGAAAATTCTTTTCTATGTCCAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTTGCGGGCAAAAGTTCAGGAAGGAGTAACAATTTTAGGAGGTTAGTCCCTGAACTTGGACTTTTTTTTTTTAATGTGAATATCTGCCAAATCGTGGGTAATGAAATGCTCCAACTTCTTTTTGTAAAAATAAAATTGCACCTGCTATTATATGATTCAACAGTTCATTACTATGTAGGACACGAATCAATGTGTACACATCTTGTTATGAAAGATAAGATATTTGTATATGATTTGGCTCGCCAGCGAATCGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCAGTCACATCTGGGAAGAACGAGTTCGTCAATGCAGGGCAGTTGAGCATGAGCGGCTCGACCCGAGATAAACTCCTTCAATCACTAACTATGGAAGCATTAGCAATGTTAATGAGTCGCATTTTGTTCATTCACTCCCAGCTTCTGTAA 1752 44.29 MANSKNPQNSTEMRAFSSSILALASVVLPATVVYCGFPVPLLSLHRAFPSSPPVQLETLRARDRLRHARILQGVVDFSVEGSSDPLLVGYLVCDIFVPVILCLAAGRSFRSERAREREGVKLGTPPMEFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLVSCSDPICNSAFQTTATQCLTQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSASVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLPIDPSVFATSINRGTIVDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTRSVSTSHCIKRGLDLQLTQDLNGGKFFSMSSVGEIFPLVSLNFAGKSSGRSNNFRRLVPELGLFFFNVNICQIVGNEMLQLLFVKIKLHLLLYDSTVHYYVGHESMCTHLVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSGKNEFVNAGQLSMSGSTRDKLLQSLTMEALAMLMSRILFIHSQLL 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31009007 31014004 - Lsi03G019590.1 Lsi03g01959 659709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01959 583 Gene3D Acid Proteases 302 536 IPR021109 -
Lsi03g01959 583 PANTHER ASPARTYL PROTEASES 19 397 IPR001461 GO:0004190|GO:0006508
Lsi03g01959 583 CDD pepsin_A_like_plant 120 369 IPR034161 -
Lsi03g01959 583 Pfam Xylanase inhibitor N-terminal 120 301 IPR032861 -
Lsi03g01959 583 SUPERFAMILY Acid proteases 120 532 IPR021109 -
Lsi03g01959 583 PANTHER ASPARTYL PROTEASES 426 546 IPR001461 GO:0004190|GO:0006508
Lsi03g01959 583 Pfam Xylanase inhibitor C-terminal 319 402 IPR032799 -
Lsi03g01959 583 PRINTS Pepsin (A1) aspartic protease family signature 349 360 IPR001461 GO:0004190|GO:0006508
Lsi03g01959 583 PRINTS Pepsin (A1) aspartic protease family signature 122 142 IPR001461 GO:0004190|GO:0006508
Lsi03g01959 583 ProSiteProfiles Peptidase family A1 domain profile. 116 524 IPR033121 -
Lsi03g01959 583 Gene3D Acid Proteases 119 301 IPR021109 -
Lsi03g01959 583 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 426 546 - -
Lsi03g01959 583 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 19 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01959 - - - csv:101204039 781.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01276 Lsi03g01959 CCT
Lsi01g01276 Lsi03g01959 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01959 Lsi-Chr3:31009007 Lsi11g00964 Lsi-Chr11:15057562 1.16E-73 dispersed
Lsi01g01276 Lsi-Chr1:11023916 Lsi03g01959 Lsi-Chr3:31009007 1.85E-161 wgd
Lsi10g01210 Lsi-Chr10:16379342 Lsi03g01959 Lsi-Chr3:31009007 1.31E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1086 . . Bda01g00372 . . Bpe03g01263 . Bma10g00063 Cmo06g00420 . . Cma07g00884 . Car07g00873 . . Cpe08g01063 Bhi03g01538 . . . Hepe04g0962 . . Cla04g00942 Cam04g0981 Cec04g1102 Cco04g1163 Clacu04g1008 Cmu04g0994 Cre04g1050 . . Cone13ag1230 . Lsi01g01276 Csa06g02633 Chy08g00891 Cme04g02458 Blo07g01372 . . Bda05g01201 . Bpe02g00737 Bma01g01975 . Sed04g1426 . Cmo07g00916 Cma06g00425 . Car06g00365 . Cpe03g00220 Cpe19g00441 Bhi11g02016 Tan08g1807 Cmetu04g0283 Lac10g2940 Hepe05g0316 . . Cla10g01863 Cam10g1920 Cec10g1975 Cco10g1947 Clacu10g1937 Cmu10g2681 Cre10g2069 Lsi03g01959 . . Cme08g01252
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001498 4 2 6 5 5 1 3 1 1 2 1 1 3 2 2 3 1 2 3 1 1 2 2 2 2 2 2 4 4 2 72