Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01960 ATGGCAGATCCCGCGGCTCCAGACTCTATCACCAGCAACGCGCCGGCGGCCGCTGCCACCGCCACCGATGGCGCGAGTTCTGCCCCACCCGTAGTTACGCCAGTGCCCAAACGAGCTTGGGGCGATGAAGAAGACGATGATGTGAGTGATACTGGAGATTCGTCCTCTGCGCCTACGGAGTACATGGGATCCCTTAAAATCCAAGACGAAACAACGCTTGAAGAACCCATAGACTCTGACATCACAGCGGTGACAACCGGTGATACTCCATATACATCAGCCACTACTTTTGAGGATCTGAATCTGTCTAAAGAGTTGTTGAAGGGTTTGTATGTTGAGATGAGATTCCATAAGCCAAGTAAAATTCAAGCTATAAGTTTACCTATGATCTTGACTCCTCCTCACAAAGATTTAATTGCTCAAGCGCATAATGGTTCTGGAAAGACTACCTGTTTTGTGCTTGGGATGTTGAGTCGTGTTGATGTGAACTTGAAGGCTCCGCAGGCGTTTTGTATATGTCCTACAAGGGAGTTAGCCATGCAGAATATTGAGGTTCTTAAGAAAATGGGAAAATACACCGGGATAACTTCAGAATGTGCTGTTCCCGCCGACAGCGCTAACTATGTACCTATTTCAAAGCGACCACCAATAACTGCGCAAGTTGTGATCGGAACTCCTGGCACAATAAAGAGATGGATGACGGCGAGGAAGTTGGGAGTAAGTTGCGTGAAGATTCTTGTTTTTGATGAGGCTGATCATATGCTTGGCGAGGATGGCTTTCAGGATGATTCATTGAGAATCATGAGGGACATTGAGAGAAGTAGCCCTCATTGCCAGGTGCTTCTGTTCTCTGCTACATTTGATGAGAATGTTAAAAAGTTTGTCTCTAGGGTTGTTAAAGACTACAACCAACTTTTTGTGAAGAAAGAGGAACTATCTTTGGAGAGTGTGAAGCAATTCAAGTTGATATGTCCAGATGAATTAACTAAAATTCGAGTCATAAAAGATAGAATTATTGAACTTGCGGACAAATTGGGTCAGACAATTATATTTGTGCGCACAAGAAACAGTGCTGGCATGTTACATAAGGCACTAGTTGATCTTGGTTATGATGTGACTACCATTCAAGGGGCACTGACAAATGAAATTAGAGACAAAATAATAAAAGAGTTCAAGGACGGTTTGACCAAAGTTCTTATTTCGACTGACCTTCTAGCTCGAGGCTTTGATCAGCAACAGGTCAATCTAGTTATCAATTATGATCTTCCTCTTAAATATGAACCTTCTTCACAAACGACGAAATACAGATTTTCCTCATCATCTGAACCTAACTATGAGGTGTATCTTCATAGAATTGGTCGGGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGTTGTGTGGCGATGAGGAAATCATGCGAATGGACAAAATTCAGAACCATTTTGGTTCTGAAATAATAGAGGTTCGAGACTCCGATGAGGACATTCAAGCAGCCTTAAGAACTGCCGGATTGGTTTGA 1527 43.55 MADPAAPDSITSNAPAAAATATDGASSAPPVVTPVPKRAWGDEEDDDVSDTGDSSSAPTEYMGSLKIQDETTLEEPIDSDITAVTTGDTPYTSATTFEDLNLSKELLKGLYVEMRFHKPSKIQAISLPMILTPPHKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAVPADSANYVPISKRPPITAQVVIGTPGTIKRWMTARKLGVSCVKILVFDEADHMLGEDGFQDDSLRIMRDIERSSPHCQVLLFSATFDENVKKFVSRVVKDYNQLFVKKEELSLESVKQFKLICPDELTKIRVIKDRIIELADKLGQTIIFVRTRNSAGMLHKALVDLGYDVTTIQGALTNEIRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPLKYEPSSQTTKYRFSSSSEPNYEVYLHRIGRAGRFGRKGAVFNLLCGDEEIMRMDKIQNHFGSEIIEVRDSDEDIQAALRTAGLV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31019511 31022792 + Lsi03G019600.1 Lsi03g01960 659710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01960 508 Gene3D - 79 311 IPR027417 -
Lsi03g01960 508 Pfam DEAD/DEAH box helicase 121 294 IPR011545 GO:0003676|GO:0005524
Lsi03g01960 508 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 95 124 IPR014014 GO:0003724
Lsi03g01960 508 CDD SF2_C_DEAD 317 468 - -
Lsi03g01960 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 479 IPR027417 -
Lsi03g01960 508 MobiDBLite consensus disorder prediction 52 66 - -
Lsi03g01960 508 Gene3D - 312 499 IPR027417 -
Lsi03g01960 508 SMART helicmild6 359 459 IPR001650 -
Lsi03g01960 508 MobiDBLite consensus disorder prediction 1 90 - -
Lsi03g01960 508 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 74 490 - -
Lsi03g01960 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 305 IPR014001 -
Lsi03g01960 508 CDD DEADc_DDX19_DDX25 102 305 - -
Lsi03g01960 508 Pfam Helicase conserved C-terminal domain 333 459 IPR001650 -
Lsi03g01960 508 SMART ultradead3 115 320 IPR014001 -
Lsi03g01960 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 499 IPR001650 -
Lsi03g01960 508 PANTHER DEAD-BOX HELICASE DBP80 74 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01960 Lsi-Chr3:31019511 Lsi07g00592 Lsi-Chr7:6285937 9.02E-61 dispersed
Lsi03g01960 Lsi-Chr3:31019511 Lsi02g02921 Lsi-Chr2:35428963 3.33E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01960 K18655 - csv:101222195 897.116