Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01967 ATGGAGCAAGACAACGCCGCCGCCACTACCGCCGAGAGTGAGAGCCAAAACAAATCGAGACTAGCCATTCTCGAGCTCGCCAACATGATCAGCGTTCCGATGTCCCTCAACGCCATCGTCCGCCTCAACGTTGCCGACGCCATCTGGCAAGAAGGTTCCAACTCTCCGCTCTCCGCCTCCGAGATCCTCGCACGCGGAGTTCCGTCCGGTGGCGACGCCGATAATCTCGAGCGAATCTTACGTATGCTCACTAGCTACGGTGTTTTCGAGGAACATCTCAGCCCTAACTCATCTAACCGCCGGTATTCCCTCACCGACGTCGGAAAAACTCTAGTTAAAGATTCCGATGGCCTCTCCTACGCGCCGTACGTGCTTCAGCATCATCAGGACGCGCTTATGAGAGCGTGGCCGAGAGTGCACGAGGCTGCGATCGACGCGACGACGGAGCCGTTCGTTAGAGCAAACGGCGAACCGGCGTACAGTTACTATGGGAAGAAGGCGGAGATGAACGAATTGATGCAGAGAGCGATGGCCGGCGTATCGGTGCCGTTCATGAAAGCTGTATTGGACGGCTACGATGGCTTCAAAGGAGTTGAGAAATTAGTCGACGTCGGCGGAAGCGCCGGCGATTGCTTGCGGATGATTTTACAGAAACATCCTCACATTAAGGAAGGGATCAACTTTGATCTGCCGGAGGTGGTGGCTAGGGCTCCTAGCATCCCCGGTGTGAGTCACGTTGGAGGTGATATGTTCAAGTCCGTCCCGACTGGTGATGCTATTTTCATGAAGTGGGTTCTTTCTACATGGACGGACGATGAATGCAAAATTATATTGGAGAATTGCTGCAAATCTCTCCCGGCGGGAGGAAAATTGATAGCTTGTGAGCCGACATTGCCGGAGAAGACGGATGATAGTCACCGGACGCGTGCTCTTTTGGCCAGCGACATATTCATCATGACCATTTACAAAGCCAAAAGTAAGCAGCGAACTGAGGAGCAGTTCCGGCAACTCGGCCTCTCCGCCGGCTTCTCCGCCCTCCGACCATTTCATATCGATTATTTCTATTGTCTGTTGGAATTCCAAAAGTGA 1089 53.44 MEQDNAAATTAESESQNKSRLAILELANMISVPMSLNAIVRLNVADAIWQEGSNSPLSASEILARGVPSGGDADNLERILRMLTSYGVFEEHLSPNSSNRRYSLTDVGKTLVKDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDATTEPFVRANGEPAYSYYGKKAEMNELMQRAMAGVSVPFMKAVLDGYDGFKGVEKLVDVGGSAGDCLRMILQKHPHIKEGINFDLPEVVARAPSIPGVSHVGGDMFKSVPTGDAIFMKWVLSTWTDDECKIILENCCKSLPAGGKLIACEPTLPEKTDDSHRTRALLASDIFIMTIYKAKSKQRTEEQFRQLGLSAGFSALRPFHIDYFYCLLEFQK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31090605 31096098 + Lsi03G019670.1 Lsi03g01967 659717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01967 362 Pfam O-methyltransferase domain 142 344 IPR001077 GO:0008171
Lsi03g01967 362 PANTHER OS02G0823400 PROTEIN 10 361 - -
Lsi03g01967 362 Gene3D - 4 116 IPR036388 -
Lsi03g01967 362 PANTHER O-METHYLTRANSFERASE 10 361 IPR016461 GO:0008168
Lsi03g01967 362 PIRSF O-mtase 1 362 IPR016461 GO:0008168
Lsi03g01967 362 Gene3D Vaccinia Virus protein VP39 117 362 IPR029063 -
Lsi03g01967 362 SUPERFAMILY Winged helix DNA-binding domain 17 116 IPR036390 -
Lsi03g01967 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 360 IPR029063 -
Lsi03g01967 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 362 IPR016461 GO:0008168
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01967 Lsi-Chr3:31090605 Lsi07g00322 Lsi-Chr7:3432809 4.13E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01967 - - csv:101205175 679.863