Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01970 | ATGAAGCGGGAGTTAGCTTTTGCTTTGGAGGTTCAATCTCAGCTTGAGGGAGCTCTTGGTCATACTCGTAGTGAGACTTTAGCTGAGTCGAGGTTGGGTAGTAGTTATTTAGATGAGGCTGCTCGGAGTGGTGGCTGCAAGAGATTTAAAGGCTCTGTTGTGAATGGTCTGATTGTATATACTAGGGGAAGGAAGTCTCAGATCAATGTGTACAGCGGGTTGTCGGAGAATGATAATAGGAAGAAGTGTAATAGCGCGGTGGAGCTGGAAATTCTTGGAAGCCTGGCAGCAGGGGAAAATTGTAGAACTGAGGAGGTTCAAATTCAAACGACAAGTTCTGTCTGTAAGAAAGAGTTCGATGGGGTGGTGGAAAATTCAGCAAATAAGGAAGAAGGGGCCGAGGGGAGTCCCGTAGTTGTTGCAATGGGCAGAAAAGTTGAGGGGATTTTGCCTGGGTGGGGAATTAAGCGCTTTACACGCTCCTCATTAAGACCGAAGGTTGAGCCCCTGGAAGTCGCCCCAATTGCAATAGGCTCAGTTAAAGAGGAAGTTATTTCAGATGTCGGGGGGGAAACAAGTGAAACAGTCAACTCTCTGTCAACTCCGAAGAATAAGTTGGAATTAAAAATGTCGAAGAAGATTGCATTGAATAAGAAGCCAATGACTGTGAGGGAGCTGTTTGATACTGGTTTGCTCGAGGGGGTACCTGTCATCTACATGGGCGTAAAGAAGGCATATGATTTTGGTCTGCGCGGTACAATTAAAGATAGCGGAATTTTGTGTACATGCTCCTCCTGCAATGGATGCAGAGTCATTCCCCCTTCACAATTTGAGATCCACGCTTGTAAACAATATAAACGAGCAGCACAGTATATATGTCTTGAGAATGGGAAGAGCCTGCTTGACCTGTTGAGAGCATGCAAGGGAAGTAGGCAGACACTTGAGGCCACTATACAAAGTCTGATTAGCTCTTCTCCAGAAGAAAAACATTTTACGTGTAGAGTGTGTAAAGGATGCTTTCCTTCATCCGTTGGACAAGTGGGACCTTTATGCCCTTCGTGCGAGGAATCAAAGCGATCTAAGTGTACGCTGACACTGCCAGCTCCACCCACTTCCGCAATTGATAAGAGATTGAGGTCGACAGAACCAACCACATCAAAATCATCTGGAAGTGCTCCAGTACCTATCTCTTCACGATATAAACGCAAATGGGTAACAAAAGCAAAGTCAAAATCGTTTGAATACATTCCCATCTCAAGGTCCCCCAAAAGTGCACCAATGCGTATTCCTTCAAAGAATAAGAGTGCATTGAAGATGAGAAAGAAGTCATTTGAAGAAAATGAAAATTATTTCGAGGATAATCTTGGGAAGATAGTCGAGGTTGATGATAACATCTCTTGCCAAGAATTTGCGGATGATGATGAAATAGATGATTTTGATGTGAAGATTGATGATTGGAAAATTTCTGATATGCTACTGAGGTTGCATAAGTTGGTTTTTGAGGAAGACGGATTGCTTGATGGAACTGAAGTGGCTTATTTTGCCAGGGGTCAGAAATTGCTCCAGGGTTATAAGAAGGGATCTGGAATTTTATGTTGCTGCTGCAATTGTGTGGTTAGTCCTTCACAATTTGAAGTTCATGCTGGCTGGTCTTCTCGAAAGAAACCTTATGCATACATTTACACATCAAATGGGGTTTCTCTGCATGAATTGGCAATCTCTCTCTCGAAAGGGCGCAAGTATTCTGCAAAGGATAATGATGACTTGTGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTCCACAAAGAATGTGCATCATTATCAAGTATTCCTCGTGGTGATTGGTATTGTAATTTTTGCCAGAATATGTTCCAAAGAGAGAAGTTTGTTGAGCATAATGTCAATGCTGTTGCAGCCGGAAGGGTACATGGAGTTGACCCTATTGAGCAGATAACTAAAAGATGCATTCGAATTGTTAGGAACATAGAAACAGATCTTAGTGGATGTGTGTTATGCCGTGGCTCTGATTTCAGCAAATCAGGTTTTGGTCCCCGCACAATTATACTTTGTGATCAGAAGCTGCTAATTCGTGGGCCAGAAAAGCTTCCAAATTCACTTTTAGATGCTGTCAATAGAAAGCTTGGAGAAAATGGTTCAGACATTCAGGCTGATGTTGATGTCAGTTGGAGGCTTATCAGTGGCAAAATTGCTTCACCTGAAACTCGGTTGCTATTGTCAGAAGCCATTGCTATCTTCCACGATCGCTTTGATCCTATAGTTGATATAACAAGTGGACGCGATCTTATTCCAGCCATGGTTTATGGAAGGGATGTAGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAATTGTCAACTCATTTGTTGTATCAGCTGCAATGCTTCGAGTTTTTGGGCAAGATATTGCAGAGCTGCCGCTGGTTGCGACAAGTAATGGTAACCATGGCAAGGGCTACTTCCAAACATTGTTTTCGTGCATCGAAAGGCTGCTAGCTTTCTTGAAAGTCAAATGCCTTGTTCTCCCAGCTGCCGAAGAGGCTGAGTCCATTTGGACTGAAAAATTCGGTTTTGAGAGAATAAAACCAGACCAGCTCAGCAGCTATAGAAAAAGTTGCTGCCAGATGGTGACATTCAAAGGGACATCCATGCTTCAGAAAACGGTTCCCTCGTGTCGGGTTGTAGCTCTTTCCATCACCATTGCCCTGCGCTCATTCCCACTTCCCTTGACTGCCATTGTCGCCGCTGTCGGTCCTCACAATGGTGCTTTTGAGCTTGGCATCTTCAGTAGTCTAGTGAAAGAGAGTGGTTTGGATGAGCTTTTATCTCTTGTGACTCAATTTGTGTCCAAACACCAAAACCAATGGAAGCATAAAAAGGGTTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTTTGTACAATGTTTCACTTACTTTGACAGTTGATTTGAAGGGATGTGCAAATTTTAGTAGTGTGCAAAAGGCAGTGGATGCTGTTCCTGATTATGGCTCTTCAAGGACCCTTATCCTAATTGACTCTGGAATCTACAGGGAGAAGGTAGTGATAGAAGCCAATAAAACAAACTTGATAATTGAAGGTCAAGGTTACCTCAACACTGCAATAGAATGGAATGACACAGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCACCATCTTTGCTTCAAACTTCATTGCCTACAACATCAGCTTCAAAAACACAGCTCCTGAGGCAACTCCAGGGATTGTTGGAGGACAAGCAGTTGCACTTCGAATTGCAGGAGATGAAGCTGCTTTCTATGGATGTGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAAGGAAGACATTACTTCAAAGAATGTTTCATTCAAGGATCCATTGATTTCATCTTTGGCAACGCTCAATCGCTTTACGATGGTTGTAGGATCAAATCAATAGCAAAGGAAGTGTTGGGTGGTGGGGTGAGTGGAGCCATCACAGCTCAAGGAAGGCAAACAAGAAGTGAGGAAACTGGTTTTGCTTTCATCAATTGCACAATCAATGGCTCTGGGAAGGTGTGGCTCGGCCGCGCTTGGGGTGCTTGTGCCACTGTCATCTTCTCTAAAACATATATGACCGACGTTGTTGCTACTGACGGATGGAATGATTGGAAAGACCCTTCGAGAGACCAGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAATTACAGCTTGAGAGTGCCATATTCAAAGCAGCTGAATCAAGTGGAAGCTCAACCTTACTTGGATGTTTCTTATTTGCCATTCCATGAAGATTATCCGTATTTGGAAATTTGTGGTCATTCTCATGGCTTAATTTGTCTAAGATTCGGGTATGATGCGAAATCGAGGGATTTCAAAGTGGTTAAGATTGTTAGTATTTCAGAAGGATTGACAATTCATCCTTCGAGAGTGGAAGTTTATGATTTAAGCAAAGATGGATGGAGAGAAATTGATGTGTCTGTTTGTGGCGATGTATTTAGGAAACCTTTGTTTGAGATGTATCACGAAGGAAAATTTTACTGGTGGGCGTTGGATGAATCATTTAATGAAAGAACTGAACTTATACTAACATTTGACATGAGTGAAGAGGTTTTTGGAAAAATTTCAGTCCCAGAGAGTTTCGATGAACCAGAGAATAACAGTAGTTTAGGGGTTTTGAATGGATCCATTGTTCTGTTTTATTATCCAGATGAAAGCAGTAATGAAAAAGTTTTTGAGATTTGGGAGATGGAGAAGGATGAATTTGAGGTTGTTTCGTGGTCAAATGTATTGACGATAGGCCCTGTTTTTGGAATTGAATATCCATTGTTGTTTTTAAGCTCCGATGAAGTTTTAATGGAGTCCAAAGAAGGACAAGTGATTTTGTACAATACTGAAACTCAACAGTCGAAACAGCTCCCAATAAAAGGGGAACTAAGAGACAGCATAGAAAACCGATTTGAAGCTACTTTTTTTGTTAAGAGTTTGCTATCTGTGGAAGGAAGAAATATTATGAATTATGATTTTTAG | 4608 | 42.12 | MKRELAFALEVQSQLEGALGHTRSETLAESRLGSSYLDEAARSGGCKRFKGSVVNGLIVYTRGRKSQINVYSGLSENDNRKKCNSAVELEILGSLAAGENCRTEEVQIQTTSSVCKKEFDGVVENSANKEEGAEGSPVVVAMGRKVEGILPGWGIKRFTRSSLRPKVEPLEVAPIAIGSVKEEVISDVGGETSETVNSLSTPKNKLELKMSKKIALNKKPMTVRELFDTGLLEGVPVIYMGVKKAYDFGLRGTIKDSGILCTCSSCNGCRVIPPSQFEIHACKQYKRAAQYICLENGKSLLDLLRACKGSRQTLEATIQSLISSSPEEKHFTCRVCKGCFPSSVGQVGPLCPSCEESKRSKCTLTLPAPPTSAIDKRLRSTEPTTSKSSGSAPVPISSRYKRKWVTKAKSKSFEYIPISRSPKSAPMRIPSKNKSALKMRKKSFEENENYFEDNLGKIVEVDDNISCQEFADDDEIDDFDVKIDDWKISDMLLRLHKLVFEEDGLLDGTEVAYFARGQKLLQGYKKGSGILCCCCNCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCNFCQNMFQREKFVEHNVNAVAAGRVHGVDPIEQITKRCIRIVRNIETDLSGCVLCRGSDFSKSGFGPRTIILCDQKLLIRGPEKLPNSLLDAVNRKLGENGSDIQADVDVSWRLISGKIASPETRLLLSEAIAIFHDRFDPIVDITSGRDLIPAMVYGRDVGGQEFGGMYCAILIVNSFVVSAAMLRVFGQDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLKVKCLVLPAAEEAESIWTEKFGFERIKPDQLSSYRKSCCQMVTFKGTSMLQKTVPSCRVVALSITIALRSFPLPLTAIVAAVGPHNGAFELGIFSSLVKESGLDELLSLVTQFVSKHQNQWKHKKGCDEKKWNSELISLYNVSLTLTVDLKGCANFSSVQKAVDAVPDYGSSRTLILIDSGIYREKVVIEANKTNLIIEGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFIAYNISFKNTAPEATPGIVGGQAVALRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNAQSLYDGCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTINGSGKVWLGRAWGACATVIFSKTYMTDVVATDGWNDWKDPSRDQSVLFGEYECFGDGANYSLRVPYSKQLNQVEAQPYLDVSYLPFHEDYPYLEICGHSHGLICLRFGYDAKSRDFKVVKIVSISEGLTIHPSRVEVYDLSKDGWREIDVSVCGDVFRKPLFEMYHEGKFYWWALDESFNERTELILTFDMSEEVFGKISVPESFDEPENNSSLGVLNGSIVLFYYPDESSNEKVFEIWEMEKDEFEVVSWSNVLTIGPVFGIEYPLLFLSSDEVLMESKEGQVILYNTETQQSKQLPIKGELRDSIENRFEATFFVKSLLSVEGRNIMNYDF | 1535 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31110745 | 31125900 | + | Lsi03G019700.1 | Lsi03g01970 | 659720 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01970 | 1535 | MobiDBLite | consensus disorder prediction | 377 | 395 | - | - | |
| Lsi03g01970 | 1535 | Pfam | Tify domain binding domain | 252 | 307 | IPR032308 | - | |
| Lsi03g01970 | 1535 | Pfam | Tify domain binding domain | 523 | 573 | IPR032308 | - | |
| Lsi03g01970 | 1535 | PANTHER | AUTOIMMUNE REGULATOR | 701 | 911 | - | - | |
| Lsi03g01970 | 1535 | PANTHER | AUTOIMMUNE REGULATOR | 1 | 701 | - | - | |
| Lsi03g01970 | 1535 | ProSitePatterns | Zinc finger PHD-type signature. | 590 | 629 | IPR019786 | - | |
| Lsi03g01970 | 1535 | CDD | PHD1_AIRE | 589 | 629 | - | - | |
| Lsi03g01970 | 1535 | SMART | PHD_3 | 589 | 630 | IPR001965 | - | |
| Lsi03g01970 | 1535 | TIGRFAM | F_box_assoc_1: F-box protein interaction domain | 1305 | 1492 | IPR017451 | - | |
| Lsi03g01970 | 1535 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 1 | 701 | - | - | |
| Lsi03g01970 | 1535 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 576 | 664 | IPR013083 | - | |
| Lsi03g01970 | 1535 | SUPERFAMILY | FYVE/PHD zinc finger | 578 | 634 | IPR011011 | - | |
| Lsi03g01970 | 1535 | ProSitePatterns | Pectinesterase signature 2. | 1145 | 1154 | IPR033131 | - | |
| Lsi03g01970 | 1535 | Gene3D | - | 990 | 1293 | IPR012334 | - | |
| Lsi03g01970 | 1535 | ProSiteProfiles | Zinc finger PHD-type profile. | 587 | 632 | IPR019787 | - | |
| Lsi03g01970 | 1535 | Pfam | PHD-finger | 590 | 631 | IPR019787 | - | |
| Lsi03g01970 | 1535 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 787 | 878 | IPR016181 | - | |
| Lsi03g01970 | 1535 | Pfam | F-box associated | 1369 | 1497 | IPR006527 | - | |
| Lsi03g01970 | 1535 | Pfam | Pectinesterase | 998 | 1280 | IPR000070 | GO:0030599|GO:0042545 | |
| Lsi03g01970 | 1535 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 701 | 911 | - | - | |
| Lsi03g01970 | 1535 | MobiDBLite | consensus disorder prediction | 373 | 395 | - | - | |
| Lsi03g01970 | 1535 | SUPERFAMILY | Pectin lyase-like | 993 | 1286 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01970 | Lsi-Chr3:31110745 | Lsi03g02089 | Lsi-Chr3:32162737 | 1.06E-12 | dispersed | |
| Lsi04g00820 | Lsi-Chr4:7874908 | Lsi03g01970 | Lsi-Chr3:31110745 | 3.43E-55 | dispersed | |
| Lsi04g00821 | Lsi-Chr4:7896156 | Lsi03g01970 | Lsi-Chr3:31110745 | 5.60E-49 | dispersed | |
| Lsi04g00872 | Lsi-Chr4:8531550 | Lsi03g01970 | Lsi-Chr3:31110745 | 4.22E-06 | dispersed | |
| Lsi09g01321 | Lsi-Chr9:21057745 | Lsi03g01970 | Lsi-Chr3:31110745 | 8.44E-36 | dispersed | |
| Lsi10g01351 | Lsi-Chr10:17726751 | Lsi03g01970 | Lsi-Chr3:31110745 | 3.84E-13 | dispersed | |
| Lsi10g01441 | Lsi-Chr10:18485166 | Lsi03g01970 | Lsi-Chr3:31110745 | 4.50E-35 | dispersed | |
| Lsi02g01465 | Lsi-Chr2:20344499 | Lsi03g01970 | Lsi-Chr3:31110745 | 2.30E-63 | transposed | |
| Lsi02g01846 | Lsi-Chr2:24224202 | Lsi03g01970 | Lsi-Chr3:31110745 | 1.57E-62 | transposed | |
| Lsi02g02501 | Lsi-Chr2:31482061 | Lsi03g01970 | Lsi-Chr3:31110745 | 2.15E-56 | transposed | |
| Lsi03g01496 | Lsi-Chr3:25966594 | Lsi03g01970 | Lsi-Chr3:31110745 | 8.25E-83 | transposed | |
| Lsi03g01884 | Lsi-Chr3:30250892 | Lsi03g01970 | Lsi-Chr3:31110745 | 2.98E-76 | transposed | |
| Lsi05g01418 | Lsi-Chr5:22144237 | Lsi03g01970 | Lsi-Chr3:31110745 | 3.75E-67 | transposed | |
| Lsi06g00224 | Lsi-Chr6:2582297 | Lsi03g01970 | Lsi-Chr3:31110745 | 2.77E-82 | transposed | |
| Lsi07g00228 | Lsi-Chr7:2470579 | Lsi03g01970 | Lsi-Chr3:31110745 | 5.88E-06 | transposed | |
| Lsi07g00229 | Lsi-Chr7:2501961 | Lsi03g01970 | Lsi-Chr3:31110745 | 6.53E-63 | transposed | |
| Lsi07g00787 | Lsi-Chr7:8644786 | Lsi03g01970 | Lsi-Chr3:31110745 | 3.90E-72 | transposed | |
| Lsi09g00424 | Lsi-Chr9:4495920 | Lsi03g01970 | Lsi-Chr3:31110745 | 1.10E-82 | transposed | |
| Lsi10g00375 | Lsi-Chr10:5763626 | Lsi03g01970 | Lsi-Chr3:31110745 | 1.47E-61 | transposed | |
| Lsi11g00643 | Lsi-Chr11:6778495 | Lsi03g01970 | Lsi-Chr3:31110745 | 8.04E-58 | transposed | |
| Lsi11g01132 | Lsi-Chr11:19773049 | Lsi03g01970 | Lsi-Chr3:31110745 | 7.92E-06 | transposed | |
| Lsi10g01217 | Lsi-Chr10:16457565 | Lsi03g01970 | Lsi-Chr3:31110745 | 6.97E-09 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25068 | PF01095 | Pectinesterase | 9.90E-63 | CL0268 | Lsi | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01970 | - | - | csv:101203549 | 1548.49 |