Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01985 ATGGATAGAGAGTGGGGTTCGAAGCCGGGAAGTGGAGGTGCGGCCTCTGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGAGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGAACACTAGGAACAGTGAGGTTAAGATTCCTGCTTTTAAGGCAAGTAACATTAACATGTATCCAATTGACTCCATGTCGATTAAAATTGGAAGGCCTGGTTATCGAGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTATGAGCAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATCGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCGACCCCAAAATTCTTCTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAATGGAACAGTGCCATCTGGTGCACCACCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCGCCCCAGCAAGGAGCACCACCTAGAGTTCCTCCTCCTCCGATGCCTGGGTCCTTGCCGCCTCCCCCTTCTGTTATGGCCAACGGTCCTCCTAGGCCAATGCCTCCTGGCGGGGCTCCGCCCATCCCTCCGCCACCTCCAATTGGTAATAACACAATGGTGAATTTCACTCCTGGTACTCAGATGAATAGACCTCCCATGCCGCCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCGCCACCACCACCACCACCCAATATGGGATAG 1089 51.06 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINMYPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPNMG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31235338 31238422 - Lsi03G019850.1 Lsi03g01985 659735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01985 362 MobiDBLite consensus disorder prediction 237 322 - -
Lsi03g01985 362 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Lsi03g01985 362 Gene3D - 114 239 - -
Lsi03g01985 362 MobiDBLite consensus disorder prediction 83 104 - -
Lsi03g01985 362 Pfam Zinc-finger of C2H2 type 52 76 - -
Lsi03g01985 362 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Lsi03g01985 362 Gene3D Classic Zinc Finger 46 89 - -
Lsi03g01985 362 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Lsi03g01985 362 MobiDBLite consensus disorder prediction 1 21 - -
Lsi03g01985 362 PRINTS Proline rich extensin signature 235 256 - -
Lsi03g01985 362 PRINTS Proline rich extensin signature 275 292 - -
Lsi03g01985 362 PRINTS Proline rich extensin signature 256 272 - -
Lsi03g01985 362 PRINTS Proline rich extensin signature 297 322 - -
Lsi03g01985 362 MobiDBLite consensus disorder prediction 234 362 - -
Lsi03g01985 362 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 355 - -
Lsi03g01985 362 MobiDBLite consensus disorder prediction 333 362 - -
Lsi03g01985 362 SMART CactinC_cactus_3 122 236 - -
Lsi03g01985 362 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 130 224 IPR031781 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01985 K12826 - csv:101202831 444.121