Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01989 ATGCCGTTTCAGAGGATAGTAATCGCCGTCGGTCGGCCGGAGGAGGCCACCCACCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTTATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCTCCGACCACCCCTGCCGGCCTCATCAGCGCCTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCTGCCAACATCTCCGGCGGCCACCTCAACCCCGCCGTCACTTTCGGCGCCTTGGTCGGCGGTAATATCACTATTCTACGCGGCATTCTTTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCCATTACGGGATTCTTGCCATCATCAGGGGTGGGAGTATGGGAGGCATTTGTATTCGAGATTGTAATGACATTCGGATTAGTCTACACAGTTTACGCCACCGCCATTGATCCCAAAAGAGGTGAATTGGGAGTAATAGCACCCATTGCCATCGGATTAATCGTCGCCGCCAACATTTTGGTCGGAGGCCCATTCTCCGGAGCCTCCATGAACCCAGCAGTGGCCTTCGGACCTGCCGTCGTGTCTTGGTCTTGGGCCTACCATTGGATCTATTGGGCTGGCCCACTCATCGGTGGTGGCTTAGCCGGCATTGTCTATGAGCTCTTCTTCATTGGGTTCACCCACGAACCCCTGCCCGCCGCAGAGTACTAG 762 56.69 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTTPAGLISASLAHGFALFVGVSTAANISGGHLNPAVTFGALVGGNITILRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPSSGVGVWEAFVFEIVMTFGLVYTVYATAIDPKRGELGVIAPIAIGLIVAANILVGGPFSGASMNPAVAFGPAVVSWSWAYHWIYWAGPLIGGGLAGIVYELFFIGFTHEPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31267990 31270450 + Lsi03G019890.1 Lsi03g01989 659739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01989 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Lsi03g01989 253 PANTHER AQUAPORIN-8 7 252 IPR034294 -
Lsi03g01989 253 CDD MIP 23 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 TIGRFAM MIP: MIP family channel proteins 27 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 PANTHER AQUAPORIN TIP1-1 7 252 - -
Lsi03g01989 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Lsi03g01989 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01989 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01292 Lsi03g01989 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01989 Lsi-Chr3:31267990 Lsi10g01268 Lsi-Chr10:16972498 4.75E-35 dispersed
Lsi02g00286 Lsi-Chr2:2454034 Lsi03g01989 Lsi-Chr3:31267990 1.87E-92 transposed
Lsi02g02816 Lsi-Chr2:34324196 Lsi03g01989 Lsi-Chr3:31267990 1.39E-89 transposed
Lsi05g00309 Lsi-Chr5:3961833 Lsi03g01989 Lsi-Chr3:31267990 6.83E-28 transposed
Lsi05g01452 Lsi-Chr5:22377389 Lsi03g01989 Lsi-Chr3:31267990 2.90E-19 transposed
Lsi08g01089 Lsi-Chr8:19491710 Lsi03g01989 Lsi-Chr3:31267990 3.58E-62 transposed
Lsi09g00431 Lsi-Chr9:4593972 Lsi03g01989 Lsi-Chr3:31267990 2.45E-97 transposed
Lsi09g00520 Lsi-Chr9:5432051 Lsi03g01989 Lsi-Chr3:31267990 4.77E-57 transposed
Lsi02g01671 Lsi-Chr2:22504748 Lsi03g01989 Lsi-Chr3:31267990 1.45E-89 transposed
Lsi01g01292 Lsi-Chr1:11208708 Lsi03g01989 Lsi-Chr3:31267990 9.51E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01989 K09873 - csv:101222386 461.455