Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01994 ATGGCCGCCTCAAATCCCACCTCCGGTAACCCCTTCTGGTACCAGTTGCTCTTTGGGCGGTGGTTCTCTGTCTTTGCTTCCATTCTCATCATGTCCGTCTCCGGCGCCACCTATATGTTCGGCCTCTACTCCTCCGACATCAAATCCTCCTTAGGCTACGACCAAACCACCCTTAATTTGCTCAGCTTCTTCAAGGACTTAGGCGGCAATGTCGGCGTCATCAGCGGCCTCATCAACGAGGTCGCTCCGGCCTGGGTCGTTCTTCTAATCGGCGCCGTCATGAACCTTTTCGGCTACACCATGATTTGGCTGGCCGTAACCAATCGGATACCCAAGCCCCAGATCTGGCATATGTGTCTCTACATTTGTATCGGATCTAATTCTCAGACCTTTGCAAATACAGGGGCTCTTGTAACCTCCGTCAAAAACTTCCCGGAAAGTCGTGGTAGTGTTTTGGGGCTTTTGAAGGGATTCGTCGGCTTAAGCGGCGCTATATTATCCCAGCTTTTCCATGCCTTTTATGGCAACAACTCCAAATCTCTTATCCTCTTAATCGCCTGGCTTCCAGCTGCCGTCTCTGTTACTTTCCTCCGTTTCATTCGCATCATTAAGGATCTCCGGCAGCCTAATGAGCTCAAAGTTTTTTACCATATCCTTTATATTTCTCTTGGCCTTGCTGGATCGTTAATGGTTTTGATTATTTTGCAAAATCTTCTCCAATTTCAACAAAGACAATACGCCGGAAGTGTCATTGTTGTGATTGTTCTGCTTTTACTGCCTCTAGCCATCGTTTTCAGAGAGGAATTGAGTGTTTGGAAGAGTAAAACTGCAAGTCCAACTTTACAATTAGAGCTAGCATCTCAACCACCACCGCCGTCAGTGACCTCGGTGGTGCCACCGGCGCCGCCGAGCCCTCCGTCGGGCTCTTGCTTTAAAAACACGTTTAAACCTCCAGACAGAGGAGAGGACTACACAATCCCACAAGCCATTTTCAGCATCGATATGATCATTCTTTTTATCGCCACAATCTGTGGTGTCGGTGGAACATTGACGGCGATCGACAATTTGGGCCAAATCGGGGAGTCTTTGGGGTACCCATCTCACAGTACCACCACATTTATCTCTCTCGTCAGCATATGGAATTACCTCGGCCGTGTAGTCTCCGGTTTCGTATCGGAATATTTCTGGAAAAAATACAAAGTCCCACGTCCTCTGTTTCTCTTCGCGACGCTTATTTTATCCTGCGTCGGCCATCTTCTAATCGCATTCGGAGTTCCAAATTCCCTGTATTTTTCTTCAATCATAATTGGGTTCTGCTTCGGCGCACAGTGGCCGTTGATCTTCGCAATCATATCGGAAATTTTCGGGCTGAAGTACTACGCAACTCTGTACAATTTGGGAGGAACGGCGAGCCCGATTGGGGCGTATATTGTGAACGTGAGAGTGGCGGGTCATTTGTACGACAGGGAGGCGCAGCGGCAGATGGAGGTGGCAGGGCGGCGAAGAAAAATAGGAGAGGATTTGATCTGCTTGGGAGTGGAATGTTACAGAAAGGCGTTTCTTATAATCACGGTGGCGACGGTGTTAGGGGGACTTGTTTCGCTGATTTTGGTGGTTCGGACATGGAAGTTTTATAAGGGTGATATTTACAGGAAGTTCACGGAGGAGGAAGGTGAAGATGTTGAGATTGAAGATGTTGAGATTAAAATCTCCGCTCCGACAAACAGTGTGCTGACGACGGCCAAAACTGAATCTGTTTAG 1761 48.21 MAASNPTSGNPFWYQLLFGRWFSVFASILIMSVSGATYMFGLYSSDIKSSLGYDQTTLNLLSFFKDLGGNVGVISGLINEVAPAWVVLLIGAVMNLFGYTMIWLAVTNRIPKPQIWHMCLYICIGSNSQTFANTGALVTSVKNFPESRGSVLGLLKGFVGLSGAILSQLFHAFYGNNSKSLILLIAWLPAAVSVTFLRFIRIIKDLRQPNELKVFYHILYISLGLAGSLMVLIILQNLLQFQQRQYAGSVIVVIVLLLLPLAIVFREELSVWKSKTASPTLQLELASQPPPPSVTSVVPPAPPSPPSGSCFKNTFKPPDRGEDYTIPQAIFSIDMIILFIATICGVGGTLTAIDNLGQIGESLGYPSHSTTTFISLVSIWNYLGRVVSGFVSEYFWKKYKVPRPLFLFATLILSCVGHLLIAFGVPNSLYFSSIIIGFCFGAQWPLIFAIISEIFGLKYYATLYNLGGTASPIGAYIVNVRVAGHLYDREAQRQMEVAGRRRKIGEDLICLGVECYRKAFLIITVATVLGGLVSLILVVRTWKFYKGDIYRKFTEEEGEDVEIEDVEIKISAPTNSVLTTAKTESV 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31328766 31330526 - Lsi03G019940.1 Lsi03g01994 659744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01994 586 MobiDBLite consensus disorder prediction 292 306 - -
Lsi03g01994 586 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 10 565 - -
Lsi03g01994 586 CDD MFS_Mch1p_like 19 530 - -
Lsi03g01994 586 Gene3D MFS general substrate transporter like domains 328 544 IPR036259 -
Lsi03g01994 586 MobiDBLite consensus disorder prediction 285 306 - -
Lsi03g01994 586 SUPERFAMILY MFS general substrate transporter 24 547 IPR036259 -
Lsi03g01994 586 Pfam Major Facilitator Superfamily 355 538 IPR011701 GO:0022857|GO:0055085
Lsi03g01994 586 PANTHER MFS TRANSPORTER 10 565 - -
Lsi03g01994 586 Pfam Nodulin-like 20 265 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01994 Lsi-Chr3:31328766 Lsi04g00096 Lsi-Chr4:1102253 0 dispersed
Lsi06g01498 Lsi-Chr6:25437256 Lsi03g01994 Lsi-Chr3:31328766 6.87E-105 dispersed
Lsi03g01994 Lsi-Chr3:31328766 Lsi03g01999 Lsi-Chr3:31359044 0 proximal
Lsi01g01296 Lsi-Chr1:11237794 Lsi03g01994 Lsi-Chr3:31328766 0 wgd
Lsi03g01994 Lsi-Chr3:31328766 Lsi08g00691 Lsi-Chr8:15212551 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01994 - - csv:101216551 962.214