Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01999 ATGGCCGCCTCAAATCCCACCTCCGGCAACTCCTTCTGGTACCAGTTGCTCTTTGGGCGGTGGTTCTCTGTCTTTGCTTCCATTCTCATCATGTCCGTCTCTGGCGCCACCTTCATGTTTGCTCTTTACTCCTCCGACATCAAATCCTCCTTAGGCTACGACCAAACCACCCTCAATTTGTTCAGCTTCTTCAAGGACATAGGCGCCAATGTCGGAGTCATCAGCGGCCTCATCAACGAGGTTGCTCCGGCCTGGGTGGTTCTTCTAATCGGCGCCGTCATGAACCTTTTTGGCTACACCATGATTTGGCTGGCCGTAACTAATCGGATCCCCAAGCCCCAAATGTGGCATATGTGTCTCTACATTTGCATCGGAGCTAATTCTCAGACGTTTCCAAATACAGGGACTCTTATAACCTCCGTCAAAAACTTCCCGGAAAGTCGCGGTAGCATTTTGGGGCTTTTGAAGGGATTCGTCGGCTTAAGCGGCGCCATTTTGTCCCAGCTTTTCCATGCCTTTTATGGCAACAATTCCAAATCTTTTATCCTCTTAAGCGCCTGGCTTCCCACCGCTGTCTCTGTTATTTTCCTCCGTTTCATTCGCATCATTAAGGATCTCCGGCTGCCCAACGAGCGCAAAGTTTTTTACCATATCCTTTATATTTCTCTCGGCCTTGCTGGGTCGTTAATGGTTTTGATTATTTTGCAAAACCGTATTCGATTTCAACAAATACAATATGTCGGAAGTGTCATTGTTGTGATTGCTCTGCTTTTACTACCTCTGGCCATCGTTTTCAGAGAGGAATTGAGTGTTTGGAAGAGTAAAATCGAAAACCCAATTTCACAATTAGAGTTAGCATCCCAACAACAACCGCCGCCACTGACGTCAGTGGTGCCACCGGCGCCGCCGAGCCCTCCGTCGGGCTCCTGCTTTAAAAACACGTTTAAACCCCCAAACAGAGGAGAGGACTACACAATCCCACAAGCCGTTTTCAGCGTCGATATGATAATTCTTTTTATCACCACAATCTGCGGTCTCGGTGGAATAATGACGGCGATCGACAATTTGGGCCAAATCGGAGAGTCTTTGGGGTACCCATCTCACAGTACCACCACATTCATTTCTCTCGTCAGCATATGGAATTACCTCGGCCGTGTAGTATCCGGATTCTTATCGGATTACTTCTGGAAAGAGTACAAACTCTCACGTCCTCTGTTTCTGTTCGCCATACTTATTCTGTCCTGCGTCGGCCATCTTCTAATCGCATTCGGAGTTCCGAATTCGCTGTATTTTTCTTCAATCATAATCGGGTTATGCTTTGGCGCGCAGTTGCCGTTGATCTTAGCAATCATATCGGAAATTTTTGGACTGAAGTACTATGCGACTCTGTGCAATTTTGGAGGAGCTGCGAGCCCGATTGGGGCGTATATTATGAAAGTGAATGTGGTAGGTCATTTGTACGACAGGGAGGCGGAGCGGCAGATGGAGGCAGCAGGGCGAAGGAGAAAAATAGGGGAGGATTTGAGTTGCTTGGGAGTTGAGTGTTACAGAAAGGCATTTCTTATAATCACGGGGGCGACGGTGTTGGGGGGACTTGTTTCGCTGATTTTGGTGGTTCGGACATGGAAGTTTTATAAGGGCGATATTTACAAGAAGTTCAGGGAGGAGGAAGGTGAAAACGTCGAGATCCAAGTCACCGCTCCGACCAACAGTGGGTTGACGACGGCGAAAATTGAATCTGTTTAG 1746 47.88 MAASNPTSGNSFWYQLLFGRWFSVFASILIMSVSGATFMFALYSSDIKSSLGYDQTTLNLFSFFKDIGANVGVISGLINEVAPAWVVLLIGAVMNLFGYTMIWLAVTNRIPKPQMWHMCLYICIGANSQTFPNTGTLITSVKNFPESRGSILGLLKGFVGLSGAILSQLFHAFYGNNSKSFILLSAWLPTAVSVIFLRFIRIIKDLRLPNERKVFYHILYISLGLAGSLMVLIILQNRIRFQQIQYVGSVIVVIALLLLPLAIVFREELSVWKSKIENPISQLELASQQQPPPLTSVVPPAPPSPPSGSCFKNTFKPPNRGEDYTIPQAVFSVDMIILFITTICGLGGIMTAIDNLGQIGESLGYPSHSTTTFISLVSIWNYLGRVVSGFLSDYFWKEYKLSRPLFLFAILILSCVGHLLIAFGVPNSLYFSSIIIGLCFGAQLPLILAIISEIFGLKYYATLCNFGGAASPIGAYIMKVNVVGHLYDREAERQMEAAGRRRKIGEDLSCLGVECYRKAFLIITGATVLGGLVSLILVVRTWKFYKGDIYKKFREEEGENVEIQVTAPTNSGLTTAKIESV 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31359044 31360789 + Lsi03G019990.1 Lsi03g01999 659749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01999 581 PANTHER MFS TRANSPORTER 9 569 - -
Lsi03g01999 581 SUPERFAMILY MFS general substrate transporter 221 543 IPR036259 -
Lsi03g01999 581 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 569 - -
Lsi03g01999 581 SUPERFAMILY MFS general substrate transporter 14 209 IPR036259 -
Lsi03g01999 581 CDD MFS_Mch1p_like 19 530 - -
Lsi03g01999 581 Gene3D MFS general substrate transporter like domains 329 544 IPR036259 -
Lsi03g01999 581 Pfam Nodulin-like 20 265 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01296 Lsi-Chr1:11237794 Lsi03g01999 Lsi-Chr3:31359044 0 dispersed
Lsi03g01999 Lsi-Chr3:31359044 Lsi04g00096 Lsi-Chr4:1102253 0 dispersed
Lsi03g01994 Lsi-Chr3:31328766 Lsi03g01999 Lsi-Chr3:31359044 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01999 - - csv:101216551 934.48