Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02006 ATGGCGATCACGATGCGCAAATCTTTCAATACCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTGCTTCATTCCTTTTTCGAAACTCCTCTTCTTTCCCTAACGCCCTCGCCCTTGCCGACGCTGACTCCGGCGAATCCCTAACTTTCCGTCAGCTTCAAATCCAAGTCTCTAAGCTCGCCCATGTCTTCATCCAACTAGGTATTCGAAAAGGCGATGTGGTTCTCATATTCGCGCCTAATTCCATTCACTTCCCTGTTTGTTTCTTTGCCATTGTCGCCATTGGAGCCATCGCCACTACTTGTAATCCTGCTTACACTTTCGCGGAACTGTCAAAGCAAGTCGCCAACTGCAACCCTAAGCTCGTAATCACCATTCCTGAACTCTGGGACGTAATCGGTAAACTCAACTTGCCTTCTATAATTCTGGGTTCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTGAAAAAGCCGGCGATGTGTCCAATTTACCGGTGAGTGAAGTGGGTCAGAACGATATAGCGGCTCTTTTGTATTCATCTGGGACGACGGGGATTAGTAAGGGAGTGATTCTAACTCACAGTAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGACCTTCTTGGTGATCCTAGGAACGTGTTTTTATGCTTTCTCCCAATGTTCCATGTGTTTGGTCTCTCTATAGTTGTTTACTCGCAGCTTCAAAGAGGAAACACCGTCGTTTCAATGGCGAAGTTTGAGCTGGAAAAGGCTTTGGGGGTGGCGATGAAGTACAAGATCACTCATCTTTATGTTGTTCCACCTGTAATTATAGCTCTGACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCTTTGAAGCAGATTTTATCTGGGGCGGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGATTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGAGAATATGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGTGTTGAAGCCCAAATTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGCGAAACAGGGGAAATTTGCGTGCGAGGACCAAATATGATGAAAGATGTCTCCATGAACATTTCAGGATATTTCAACAATCAGAAAGCCACCAGCCAAACCATAGATGATCAGGGATGGGTACATACTGGAGATATTGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTCATCAAGTGTTATGGTTTTCAGGTTGCACCGGCGGAGCTTGAGGCGCTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCCGGTGAGGTCCCTATTGCATTTGTTGTTCGTTCACCCGATAGCACAATAAAGGAAGAAGACGTTAAAATTTTTATTGCGGGCCAGGTTGCACCATTCAAGAGATTAAAAAGAGTAACCTTCACAAGTAGTGTTCCGAAGTCGGCTTCAGGAAAACTTCTAAGAAGGGAGGTCATAGCACAAGTCCGTGCCAAGATGTAA 1659 45.09 MAITMRKSFNTQSQIYTSRRPPIHFPTDPTISIASFLFRNSSSFPNALALADADSGESLTFRQLQIQVSKLAHVFIQLGIRKGDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFAELSKQVANCNPKLVITIPELWDVIGKLNLPSIILGSKISSKFSRPNIWGYSDLIEKAGDVSNLPVSEVGQNDIAALLYSSGTTGISKGVILTHSNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIVVYSQLQRGNTVVSMAKFELEKALGVAMKYKITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKIIPQARIIQGYGMTETCGVISVENMGVESTLSGATGSLVSGVEAQILSTETQKRLPPGETGEICVRGPNMMKDVSMNISGYFNNQKATSQTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPDSTIKEEDVKIFIAGQVAPFKRLKRVTFTSSVPKSASGKLLRREVIAQVRAKM 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31429769 31435235 + Lsi03G020060.1 Lsi03g02006 659756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02006 552 Gene3D - 450 551 IPR045851 -
Lsi03g02006 552 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Lsi03g02006 552 Pfam AMP-binding enzyme 39 454 IPR000873 -
Lsi03g02006 552 Gene3D - 13 449 IPR042099 -
Lsi03g02006 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 551 - -
Lsi03g02006 552 SUPERFAMILY Acetyl-CoA synthetase-like 16 550 - -
Lsi03g02006 552 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Lsi03g02006 552 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 551 - -
Lsi03g02006 552 CDD 4CL 25 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00010 Lsi-Chr3:165966 Lsi03g02006 Lsi-Chr3:31429769 0 dispersed
Lsi03g02006 Lsi-Chr3:31429769 Lsi04g01792 Lsi-Chr4:25135071 1.38E-121 dispersed
Lsi03g02006 Lsi-Chr3:31429769 Lsi02g02635 Lsi-Chr2:32778201 4.96E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02006 K01904 - csv:101204417 999.964