Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g02007 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCTGAGCCATTTATAACCAACAACCCATCAGCTCAAACAGCGAGAAACACAGACCCTGAAGACCTCAGACCCACAGAAGAGGCGCAAGACGGAATTGGCAGAGCCACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCTATCACCGCCGTTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGCTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACGGGTGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACTTCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCCGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCTAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATAGTTCAAATTCGAGTTGTTTTTGCGTTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCTCAGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTCAGACACCACGCCACCAACGGCGGTCTGGCTATAGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCTGCTGCCAAAATCTACCGTATAATCGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTAGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTTTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCCGGCAAGAGCACCGTCGTCTCCCTAATCGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGTGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCTCGAGTTGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTCTCTGGAGGGCAGAAGCAGAGGATAGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATCGGGCGGACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGATCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATCATTGCACGAAATTCTTCCTATGGACGATCACCATATTCACGTCGGTTATCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTGGCCTTTAAGGAGCAAGCCGGTTCTTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGTTTTTTAAGCGCCTTCTTTGCTTACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTATTAATCGGACTGTCATCAGCTGCTCTTCTTTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGTGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTAGTTGCATGCACCGCTGGGTTTGTTTTGCAGTGGCGCCTATCTCTTGTCCTCGTAGCTGTCTTCCCCGTGGTTGTTGCGGCCACTGTTTTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAGGAGAAGATTGTCAGGCTTTTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGCGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAACGGCGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGGTCAGTTTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGACGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGTCCCGATATCCCTGTCTTTAGAGACCTTAGTTTGCGCGCCCGAGCAGGTAAGACTCTTGCTCTGGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCAACATCAGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAACCGTGCTTATTTGCTGCTTCCATATATGATAATATAGCTTATGGCCATGAATCGGCCACCGAAGCCGAGATCATTGAAGCTGCTACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCGCTGATCAGGAAGGCAGAGCTTATGCTACTAGATGAGGCAACAAGTGCACTCGATGCCGAGTCTGAGCGATCTGTCCAGGAGGCGCTCGATCGAGCTTGTTCTGGGAAAACAACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTGATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCTGATGGGTGTTACGCAAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCGACTTCCTCAGCAAGAACTAGAGAGGATGAGGGGAGAGAGAGCTAG | 4080 | 46.59 | MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFITNNPSAQTARNTDPEDLRPTEEAQDGIGRATNREMESTSDSKKENGGGTSGEKPEAITAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSSALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGCDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQAGSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEGRES | 1359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31464738 | 31472536 | + | Lsi03G020070.1 | Lsi03g02007 | 659757 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g02007 | 1359 | Pfam | ABC transporter | 1111 | 1259 | IPR003439 | GO:0005524 | |
| Lsi03g02007 | 1359 | ProSitePatterns | ABC transporters family signature. | 1231 | 1245 | IPR017871 | GO:0005524 | |
| Lsi03g02007 | 1359 | ProSitePatterns | ABC transporters family signature. | 576 | 590 | IPR017871 | GO:0005524 | |
| Lsi03g02007 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1083 | 1331 | IPR027417 | - | |
| Lsi03g02007 | 1359 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 1 | 113 | 1335 | - | - | |
| Lsi03g02007 | 1359 | Pfam | ABC transporter | 455 | 604 | IPR003439 | GO:0005524 | |
| Lsi03g02007 | 1359 | MobiDBLite | consensus disorder prediction | 50 | 85 | - | - | |
| Lsi03g02007 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 1092 | 1331 | - | - | |
| Lsi03g02007 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 437 | 676 | - | - | |
| Lsi03g02007 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 160 | 1065 | IPR036640 | GO:0005524|GO:0016021 | |
| Lsi03g02007 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 437 | 673 | IPR003439 | GO:0005524 | |
| Lsi03g02007 | 1359 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 113 | 1335 | IPR039421 | - | |
| Lsi03g02007 | 1359 | Gene3D | - | 1083 | 1338 | IPR027417 | - | |
| Lsi03g02007 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 759 | 1074 | - | - | |
| Lsi03g02007 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 428 | 676 | IPR027417 | - | |
| Lsi03g02007 | 1359 | MobiDBLite | consensus disorder prediction | 1339 | 1359 | - | - | |
| Lsi03g02007 | 1359 | Pfam | ABC transporter transmembrane region | 115 | 387 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Lsi03g02007 | 1359 | Pfam | ABC transporter transmembrane region | 771 | 1039 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Lsi03g02007 | 1359 | Gene3D | - | 435 | 700 | IPR027417 | - | |
| Lsi03g02007 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 756 | 1078 | IPR036640 | GO:0005524|GO:0016021 | |
| Lsi03g02007 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 769 | 1056 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Lsi03g02007 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1092 | 1328 | IPR003439 | GO:0005524 | |
| Lsi03g02007 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 415 | IPR036640 | GO:0005524|GO:0016021 | |
| Lsi03g02007 | 1359 | SMART | AAA_5 | 464 | 650 | IPR003593 | - | |
| Lsi03g02007 | 1359 | SMART | AAA_5 | 1119 | 1311 | IPR003593 | - | |
| Lsi03g02007 | 1359 | MobiDBLite | consensus disorder prediction | 22 | 90 | - | - | |
| Lsi03g02007 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 113 | 400 | - | - | |
| Lsi03g02007 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 114 | 402 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01491 | Lsi-Chr2:20679307 | Lsi03g02007 | Lsi-Chr3:31464738 | 0 | dispersed | |
| Lsi02g02879 | Lsi-Chr2:34992232 | Lsi03g02007 | Lsi-Chr3:31464738 | 6.41E-95 | dispersed | |
| Lsi03g01883 | Lsi-Chr3:30243677 | Lsi03g02007 | Lsi-Chr3:31464738 | 9.41E-39 | dispersed | |
| Lsi03g02007 | Lsi-Chr3:31464738 | Lsi04g01239 | Lsi-Chr4:19237957 | 6.41E-95 | dispersed | |
| Lsi09g00568 | Lsi-Chr9:6117390 | Lsi03g02007 | Lsi-Chr3:31464738 | 1.82E-74 | dispersed | |
| Lsi10g01497 | Lsi-Chr10:19164415 | Lsi03g02007 | Lsi-Chr3:31464738 | 1.84E-12 | dispersed | |
| Lsi03g02007 | Lsi-Chr3:31464738 | Lsi04g01761 | Lsi-Chr4:24854240 | 3.77E-91 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g02007 | K05658 | - | csv:101220974 | 2456.4 |