Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02007 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCTGAGCCATTTATAACCAACAACCCATCAGCTCAAACAGCGAGAAACACAGACCCTGAAGACCTCAGACCCACAGAAGAGGCGCAAGACGGAATTGGCAGAGCCACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCTATCACCGCCGTTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGCTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACGGGTGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACTTCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCCGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCTAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATAGTTCAAATTCGAGTTGTTTTTGCGTTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCTCAGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTCAGACACCACGCCACCAACGGCGGTCTGGCTATAGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCTGCTGCCAAAATCTACCGTATAATCGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTAGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTTTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCCGGCAAGAGCACCGTCGTCTCCCTAATCGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGTGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCTCGAGTTGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTCTCTGGAGGGCAGAAGCAGAGGATAGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATCGGGCGGACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGATCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATCATTGCACGAAATTCTTCCTATGGACGATCACCATATTCACGTCGGTTATCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTGGCCTTTAAGGAGCAAGCCGGTTCTTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGTTTTTTAAGCGCCTTCTTTGCTTACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTATTAATCGGACTGTCATCAGCTGCTCTTCTTTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGTGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTAGTTGCATGCACCGCTGGGTTTGTTTTGCAGTGGCGCCTATCTCTTGTCCTCGTAGCTGTCTTCCCCGTGGTTGTTGCGGCCACTGTTTTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAGGAGAAGATTGTCAGGCTTTTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGCGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAACGGCGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGGTCAGTTTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGACGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGTCCCGATATCCCTGTCTTTAGAGACCTTAGTTTGCGCGCCCGAGCAGGTAAGACTCTTGCTCTGGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCAACATCAGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAACCGTGCTTATTTGCTGCTTCCATATATGATAATATAGCTTATGGCCATGAATCGGCCACCGAAGCCGAGATCATTGAAGCTGCTACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCGCTGATCAGGAAGGCAGAGCTTATGCTACTAGATGAGGCAACAAGTGCACTCGATGCCGAGTCTGAGCGATCTGTCCAGGAGGCGCTCGATCGAGCTTGTTCTGGGAAAACAACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTGATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCTGATGGGTGTTACGCAAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCGACTTCCTCAGCAAGAACTAGAGAGGATGAGGGGAGAGAGAGCTAG 4080 46.59 MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFITNNPSAQTARNTDPEDLRPTEEAQDGIGRATNREMESTSDSKKENGGGTSGEKPEAITAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSSALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGCDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQAGSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEGRES 1359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 31464738 31472536 + Lsi03G020070.1 Lsi03g02007 659757
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02007 1359 Pfam ABC transporter 1111 1259 IPR003439 GO:0005524
Lsi03g02007 1359 ProSitePatterns ABC transporters family signature. 1231 1245 IPR017871 GO:0005524
Lsi03g02007 1359 ProSitePatterns ABC transporters family signature. 576 590 IPR017871 GO:0005524
Lsi03g02007 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1331 IPR027417 -
Lsi03g02007 1359 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 113 1335 - -
Lsi03g02007 1359 Pfam ABC transporter 455 604 IPR003439 GO:0005524
Lsi03g02007 1359 MobiDBLite consensus disorder prediction 50 85 - -
Lsi03g02007 1359 CDD ABC_MTABC3_MDL1_MDL2 1092 1331 - -
Lsi03g02007 1359 CDD ABC_MTABC3_MDL1_MDL2 437 676 - -
Lsi03g02007 1359 Gene3D ABC transporter type 1, transmembrane domain 160 1065 IPR036640 GO:0005524|GO:0016021
Lsi03g02007 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 673 IPR003439 GO:0005524
Lsi03g02007 1359 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 113 1335 IPR039421 -
Lsi03g02007 1359 Gene3D - 1083 1338 IPR027417 -
Lsi03g02007 1359 CDD ABC_6TM_Pgp_ABCB1_D2_like 759 1074 - -
Lsi03g02007 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 676 IPR027417 -
Lsi03g02007 1359 MobiDBLite consensus disorder prediction 1339 1359 - -
Lsi03g02007 1359 Pfam ABC transporter transmembrane region 115 387 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi03g02007 1359 Pfam ABC transporter transmembrane region 771 1039 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi03g02007 1359 Gene3D - 435 700 IPR027417 -
Lsi03g02007 1359 SUPERFAMILY ABC transporter transmembrane region 756 1078 IPR036640 GO:0005524|GO:0016021
Lsi03g02007 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 769 1056 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi03g02007 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1328 IPR003439 GO:0005524
Lsi03g02007 1359 SUPERFAMILY ABC transporter transmembrane region 101 415 IPR036640 GO:0005524|GO:0016021
Lsi03g02007 1359 SMART AAA_5 464 650 IPR003593 -
Lsi03g02007 1359 SMART AAA_5 1119 1311 IPR003593 -
Lsi03g02007 1359 MobiDBLite consensus disorder prediction 22 90 - -
Lsi03g02007 1359 CDD ABC_6TM_Pgp_ABCB1_D1_like 113 400 - -
Lsi03g02007 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 402 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01491 Lsi-Chr2:20679307 Lsi03g02007 Lsi-Chr3:31464738 0 dispersed
Lsi02g02879 Lsi-Chr2:34992232 Lsi03g02007 Lsi-Chr3:31464738 6.41E-95 dispersed
Lsi03g01883 Lsi-Chr3:30243677 Lsi03g02007 Lsi-Chr3:31464738 9.41E-39 dispersed
Lsi03g02007 Lsi-Chr3:31464738 Lsi04g01239 Lsi-Chr4:19237957 6.41E-95 dispersed
Lsi09g00568 Lsi-Chr9:6117390 Lsi03g02007 Lsi-Chr3:31464738 1.82E-74 dispersed
Lsi10g01497 Lsi-Chr10:19164415 Lsi03g02007 Lsi-Chr3:31464738 1.84E-12 dispersed
Lsi03g02007 Lsi-Chr3:31464738 Lsi04g01761 Lsi-Chr4:24854240 3.77E-91 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02007 K05658 - csv:101220974 2456.4