Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02029 ATGGCGAACAACGACATCGAAATCGGAGGTCCGGGCACCACGGCCAGGACGGACTATTTGGACCCGCTACCGGCGCCGATGATCGACATGGAGGAGTTCACGAAATGGTCGTTTTACAGAGCTATCATTGCTGAATTTGTGGCGACTCTGTTGTTTCTGTACGTCGCCATTTTGACGGTGATCGGAAATAGCAGCCAGATGGACCCGTTCAACGGCCGGAGTTTCTGCGGCGGAGTTGGCCCCGTTGGAATCTCGTGGGTCTTCGGCGCTATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCTGCAGTGACATTCGGAATGTTTTTGGCAAGAAAGATATCGCTTGTCCGCGCCTTGCTCTACATCATAGCTCAGTGCTTGGGGGCGCTGTGCGGCTGCGCCTTGGTCAAGACATTGCAGAGAGATCGATACAACCACTACGGCGGTGGTGCGAACCAGCTCGTTGACGGTTACAGTCGAGGCACCGGCCTTGCCGTTGAGATTATGGGCACCTTTGTTCTTCTCTATACTGTCTTTTCCGCCACTGATCCCAAACGCAATGCCAGAGACTCCTATGTTCCCGTCTTGGCTCCACTCCCCATTGGCTTTGCCGTCTTCGTGGTTCACCTTGCTACGATTCCCATCACTGGCACTGGCATCAACCCGGCTCGAAGCTTCGGTACCGCCGTCATCATCAATGATCGGAAAGTTTGGAAAGATCATGAGAATATGGCAACTAGAGGTCAAGGTGGTATCCAACAATTGCTTGCTGCGGAGCAAGAAGCTCAACACATTGTCAATGCTGCCAGAAATGCAAAATTGGCTAGACTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCTGCATATCGTGCTCAAGTCGAGTCTGAATTCCAAAGAAAACTTGCTGAGAGTAGTGGAGATTCAGGAGCTAATGTTAAGCGGCTTGAAATCGAAACTGATGAAAAGATTTATCACCTGAAAGAAGAGTCTGCTAGAATTTCACACGATGTTGTGCACATGCTCCTGAAGCATGTGACAACCGTGAAAAATTGA 1065 50.33 MANNDIEIGGPGTTARTDYLDPLPAPMIDMEEFTKWSFYRAIIAEFVATLLFLYVAILTVIGNSSQMDPFNGRSFCGGVGPVGISWVFGAMIFILVYCTAGISAVTFGMFLARKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFVLLYTVFSATDPKRNARDSYVPVLAPLPIGFAVFVVHLATIPITGTGINPARSFGTAVIINDRKVWKDHENMATRGQGGIQQLLAAEQEAQHIVNAARNAKLARLKQAKEEAEKEIAAYRAQVESEFQRKLAESSGDSGANVKRLEIETDEKIYHLKEESARISHDVVHMLLKHVTTVKN 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31669324 31676219 + Lsi03G020290.1 Lsi03g02029 659779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02029 354 Pfam Major intrinsic protein 32 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02029 354 Pfam Vacuolar (H+)-ATPase G subunit 251 353 IPR005124 GO:0016471|GO:0046961|GO:1902600
Lsi03g02029 354 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 246 353 IPR005124 GO:0016471|GO:0046961|GO:1902600
Lsi03g02029 354 Gene3D - 247 354 - -
Lsi03g02029 354 CDD MIP 40 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02029 354 PANTHER AQUAPORIN PIP2-4-RELATED 13 247 - -
Lsi03g02029 354 SUPERFAMILY Aquaporin-like 31 236 IPR023271 -
Lsi03g02029 354 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02029 354 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02029 354 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02029 354 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02029 354 Gene3D Glycerol uptake facilitator protein. 25 246 IPR023271 -
Lsi03g02029 354 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 247 IPR034294 -
Lsi03g02029 354 Coils Coil 352 354 - -
Lsi03g02029 354 Coils Coil 269 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02029 Lsi-Chr3:31669324 Lsi01g01347 Lsi-Chr1:11661799 2.04E-131 dispersed
Lsi01g01346 Lsi-Chr1:11656610 Lsi03g02029 Lsi-Chr3:31669324 3.15E-113 wgd
Lsi10g01268 Lsi-Chr10:16972498 Lsi03g02029 Lsi-Chr3:31669324 4.52E-121 wgd
Lsi03g02029 Lsi-Chr3:31669324 Lsi08g00726 Lsi-Chr8:15605389 3.51E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02029 K09872 - csv:101214142 434.876