Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02030 ATGGGTAACATTGGTAGTACCGGTTCCAATGGTCGGAGAAGACACGGTAGTCGCCGGAGTCACCCAACTCCGCCACCACCAGCGCCACCCCAGCCTGAAATTACAAGTAACCGCTACGTTTTCGCCGCCGCTACGCCTTATCCAACGCAATACCCAAACCATCCGAATCATCCGCCGCCCTACTACCAGTATCCTGGTTACTTTCCACCGCCACCCGGTCCGCCGCCGTCGATGCCTATGCCTTTGCCGGCGCCTTACGATCACCACCACCGCGGAGGTCATCCCCAGATGGATCCCGCGCATTGGGTAGGTGGGAGATACCCTTATGGCCCTCCTATGCCGCCCCAAACGCCCTATGTTGAGCACCAGAAGGCGGTTACCATACGAAATGATGTCAATCTCAAGAAGGAAACTCTTAGGGTCGAGCCTGATGAAGAAAACCCTGGCCAATTCCTTGTATCATTCACGTTCGATGCCACCGTTGCTGGGAGCATCACTATCTTCTTCTTTGCGAAAGAAGGTGAGGATTGCAACTTGACCCCTGTAAAAGAAGACACCTTTCAACCAGTAACTGTCCATTTCGAACAAGGACTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCAGAGATTCTGAAAGTGAATGACACAGATGTCTATCCATTAGTTGTAAAAGCTGAGGCTTCCACTGACGGCCAAACTGGCCCGGATGGTACCCCGGTACCTGATCCCATGAATTCTCAGATAACCCAGGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTAAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTCAGAGATATGAGCTGCAGGAGATATATGGCATTGGCAATTCAGTCGAGGGCGATGTGGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAACCACGGGATACGACTGTTCTTCCCTGCCGACACATGTGTATGTGCAGTGGTTGTGCTAAGGTACTGAGGTTCCAGTCGAATCGTTGCCCGATTTGCAGACAACCCGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGAATAA 1104 50.45 MGNIGSTGSNGRRRHGSRRSHPTPPPPAPPQPEITSNRYVFAAATPYPTQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGGHPQMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDTFQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESEILKVNDTDVYPLVVKAEASTDGQTGPDGTPVPDPMNSQITQAVFEKDKGEYQVRVLKQILWVNGQRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQSNRCPICRQPVDRLLEIRVSNGPEE 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31684303 31689384 + Lsi03G020300.1 Lsi03g02030 659780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02030 367 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Lsi03g02030 367 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 367 - -
Lsi03g02030 367 SUPERFAMILY RING/U-box 310 356 - -
Lsi03g02030 367 MobiDBLite consensus disorder prediction 1 58 - -
Lsi03g02030 367 SMART ring_2 311 349 IPR001841 -
Lsi03g02030 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 360 IPR013083 -
Lsi03g02030 367 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Lsi03g02030 367 PANTHER MAHOGUNIN 1 367 IPR045194 GO:0061630
Lsi03g02030 367 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 310 350 IPR045195 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02030 Lsi-Chr3:31684303 Lsi05g01456 Lsi-Chr5:22427884 7.54E-92 dispersed
Lsi03g02030 Lsi-Chr3:31684303 Lsi09g01232 Lsi-Chr9:19773050 5.11E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02030 - - csv:101216150 614.764