Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02034 ATGTCAACTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTCCCTTTGCTCACCACCACGACGATGCTAACCCTAACCCTAACCCTAAACCGAAACCCTCCGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAAGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCATATGCGAAATTTGTAACAAAGGGTTTCAGAGAGACCAGAATCTGCAACTTCATCGACGAGGGCATAACCTACCGTGGAAGTTGCGACAACGGACAAACAAGGAGCCGATCAAGAAGAAAGTGTATATTTGTCCAGAGAAGACGTGCGTCCACCATGATCCGTCGCGAGCCCTTGGCGACCTTACCGGAATAAAGAAACATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGACAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCCTTAGCTGAAGAAAGTGCAAGAATCACGACAGTTTCAGCTACAAATATTCTCAATAATCTTAGAAATGATTCAAATAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATAATCTTCAATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCACTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCCATGAACAATAACAACAATAATATTTCCAGCTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTCGGATCGATAACCGAAAACGGGCTTTCGATGTTGCCAGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCGTCGGCAGCCGCACTGTTGTCAGGTCAGTCTTCTCAGTCTGTCGTTTCGTCTTCTCCGATGTCGGCCACCGCTCTTCTACAAAAGGCTGCTCTTATGGGCTCAACTAGAAGCAACAATAACAATTCCCCGATATTTGGTGCGGGCGCTTTCGGAGTAATGAGCTCTTCGTCTTCTTCGTCGTCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATTGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAACGGTAATAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTTGGAGGAGGAGAACCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCGAAATTCGCCACCATAAACTCAACGATGGGATTAAGCCAATTCGCAGCCAACCACTAA 1491 44.0 MSTNPFSLLSSTTTPFAHHHDDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNNILLHQQDQSLIDHHTNNNNLQSLGDISGLSQFTHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAMNNNNNNISSFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSPIFGAGAFGVMSSSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNGNNGMRSSGQTRDFLGVGGGEPPRPPFLPPELAKFATINSTMGLSQFAANH 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31704220 31706906 - Lsi03G020340.1 Lsi03g02034 659784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02034 496 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 18 466 - -
Lsi03g02034 496 MobiDBLite consensus disorder prediction 1 19 - -
Lsi03g02034 496 MobiDBLite consensus disorder prediction 1 51 - -
Lsi03g02034 496 Gene3D Classic Zinc Finger 119 201 - -
Lsi03g02034 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 466 - -
Lsi03g02034 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Lsi03g02034 496 Gene3D Classic Zinc Finger 46 118 - -
Lsi03g02034 496 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Lsi03g02034 496 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lsi03g02034 496 SMART c2h2final6 144 164 IPR013087 -
Lsi03g02034 496 SMART c2h2final6 109 139 IPR013087 -
Lsi03g02034 496 SMART c2h2final6 67 89 IPR013087 -
Lsi03g02034 496 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01357 Lsi03g02034 CCT
Lsi01g01357 Lsi03g02034 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00694 Lsi-Chr1:5544880 Lsi03g02034 Lsi-Chr3:31704220 7.54E-114 dispersed
Lsi02g02256 Lsi-Chr2:29097778 Lsi03g02034 Lsi-Chr3:31704220 9.24E-109 dispersed
Lsi02g02929 Lsi-Chr2:35493922 Lsi03g02034 Lsi-Chr3:31704220 4.36E-106 dispersed
Lsi03g00054 Lsi-Chr3:850153 Lsi03g02034 Lsi-Chr3:31704220 3.75E-23 dispersed
Lsi03g02034 Lsi-Chr3:31704220 Lsi10g00083 Lsi-Chr10:1365870 3.53E-118 dispersed
Lsi09g00719 Lsi-Chr9:8267896 Lsi03g02034 Lsi-Chr3:31704220 8.48E-75 transposed
Lsi11g00037 Lsi-Chr11:399348 Lsi03g02034 Lsi-Chr3:31704220 7.70E-109 transposed
Lsi01g01357 Lsi-Chr1:11741008 Lsi03g02034 Lsi-Chr3:31704220 9.69E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25074 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02034 K25870 - csv:101213422 756.518