Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02035 ATGGATATTCGGACATCACAAGCGCGCGACTTCTGTAGATATTCACGGAACCACTTTCACTGCCGTAGGTCACCGGAAAACCTACCGGAGCGCGGAGGCGAACAATCAAAGATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATTTGCCAGAAGTACGACAAATATGACGTTGAAAAGCAGAGAGATCTGAATGTTTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTCGAAGCTGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCTGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCTCGATTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTTAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCAGAGAGGATTCAAGCTATACCAGATGGAACTGCGACTTCCACAAAGAATAATGGGGGTTGGACATCCTCAGCTTCGCGTGCTGAAATTAAATTTGACTCAGATGGGCGATTCGATGATGAGTACTTCCAACACACTGAGGAGTCGAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAGCAGTCTCTTTATTCAATAACAAAGGATGCATGCTTACTAGTCAATGGCTGCGGTTTAAACCCTTCATTTTGGTATATGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTAGATACTCTGAAGAACATGGCACATGACATGAATGAGGAAATAGATAGGCAAGTCCCTTTAATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTCAGATTAAAAGACACAGTTAACCAGCTAAGGTCCAGCCGAAATTTCTGTATTGATATCATTCTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA 987 45.39 MDIRTSQARDFCRYSRNHFHCRRSPENLPERGGEQSKMSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPERIQAIPDGTATSTKNNGGWTSSASRAEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQSLYSITKDACLLVNGCGLNPSFWYMQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31718590 31722977 - Lsi03G020350.1 Lsi03g02035 659785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02035 328 Gene3D - 238 294 - -
Lsi03g02035 328 Coils Coil 77 97 - -
Lsi03g02035 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Lsi03g02035 328 SUPERFAMILY SNARE fusion complex 239 293 - -
Lsi03g02035 328 CDD SNARE_Qc 239 293 - -
Lsi03g02035 328 PANTHER SYNTAXIN-73 38 324 - -
Lsi03g02035 328 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi03g02035 328 PANTHER SYNTAXIN 38 324 IPR045242 -
Lsi03g02035 328 Coils Coil 282 302 - -
Lsi03g02035 328 Pfam SNARE domain 270 319 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01278 Lsi-Chr10:17020737 Lsi03g02035 Lsi-Chr3:31718590 1.38E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02035 K08506 - csv:101215905 482.256