Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02039 ATGTTGAATTTCTCTCCAATTTCCTCATACATTACCTGCACATTACTTCTTTTTTCCTTTTCCAATACTGGCATTTTCGATTTCACCGCCACCGTCGCCGCCGTCGAATTTGACTTCGGCACTGTCGCCCTCAGTAGTTTAAAGCTGCTTGGCGATGCCCACTTGAACAACGGGAGCGTGGGGCTCACTCGAGACCTCGCCGTCCCAAATTCCGGCTCCGGCAGAGTCCTCTACGCCAAACCCATCAGATTCCGGCAGCCGGGAATTGATTACCTTGCCAGTTTCTCCACATTTTTCTCCTTCTCCATCACTAATCTCAACCCCTCGTCGATCGGCGGTGGTTTGGCGTTTGTAATTTCCCCAGACGCCGAAACGCTCGGCGGCGCTGGTGGGTTGTTGGGGCTGGCCGACGAGAGGGGATTGGGGTTTGTGGCGGTGGAATTTGACACGTTAATGGACGTGGAATTTAAAGACATTAATGGAAACCATGTGGGATTGGATCTGAACGAAATGGTTTCGTTAGAGGTTAAAGATCTTGACGGAATTGGAATCGATCTCAAAAGCGGCGATACGGTGAATTCGTGGATTGAATACGACGGGTCGGCTCGGATCTTCAAAATCTTCGTTTCTTATTCGAATTTGAAACCGACAGAACCTCTAATGTCGTTTAATCTCGATCTTGATCCGTATTTGAACGATTTTATGTACGTTGGATTTTCCGGTTCAACACAGGGGAGTACGGAAGTTCACAGTGTGGACTGGTGGAGCTTTACTTCGTCGTTTGACTCAAATTCCCCACCTGGGTCGGTTCCGCCGCCGCCAACGACGACGCTGATGAACCCAACGGCGAATGTCGTTCGTTCACCGCCACCGTCGCAACCTCCATCGGGTTCAGATTCCGTCACGCAAAAGAACTCCAAGTCGACGACCTGCCACAATGGGCTCTGTAAGCAGGGCGCTGGCGCGGTGGTCGGAGTTGTGACGGCGGGGGCGTTTGTTCTAGCATTATTCGCCGGCGGGTTAATTTGGGTATATTCCAAAAAGATCAAGCGGGTCAAAAAATCGGATTCCCTCGCTTCAGAAATCATCAAAATGCCTAAGGAATTCACTTACAAGGAGCTCAAAATTGCCACCAAATGCTTCAATTCGAACAGAATCATCGGCCATGGCGCTTTTGGGACTGTTTATAAAGGAATTCTGCCGGAGACCGGCGACATTGTGGCGGTGAAACGGTGTAGCCATAGTACACAAGGGAAAAATGAATTCCTCTCTGAACTTTCAATCATCGGAACTCTCCGCCACCGGAATTTAGTCCGTCTTCAAGGATGGTGTCACGAGAAAGGCGAAATTTTACTTGTTTACGATTTAATGCCAAATGGGAGTTTAGATAAAGCACTATTCGAGGCTAGAACGCCGCTGCCGTGGCCTCACCGGAGAAAAATCCTTCTCGGCGTCGCCTCTGCTTTGGCCTATTTGCATCAAGAATGTGAAAATCAAGTCATTCATAGAGACGTTAAAACCAGTAATATAATGTTGGATGAAGGATTCAATGCTCGATTAGGCGATTTCGGATTGGCCCGACAAGTGGAGCACGATAAATCGCCGGACGCCACCGTCGCCGCTGGCACAATGGGATACTTAGCGCCGGAATATCTCCTCACCGGACGAGCTACCGAAAAAACCGACGTGTTTAGCTTTGGCGCCGTCGTTCTCGAAGTCGCCAGTGGCAGACGGCCGATCGAGAAAGAGACTGCCGCCGTTGGCGGCGGCGGAAAATTTGGTGCCAACAGTAATTTGGTGGACTGGGTTTGGAGTTTACACCGGGAAGGACGGTTGTTGACAGCGGCGGATGGGAGACTCGGCGGCGAGTTTGAGGAATCCGAGATGAGGAAAATTTTGTTAGTTGGGTTGGCTTGTTCTCATCCGGATCCGATGACCCGACCCACGATGAGAGGCGTAGTGCAAATGTTAATCGGCGATTCGGAGATTCCGATCGTCCCTCGGTCTAAGCCGTCAACGAGCTTCAGTACCGCTCATTTGCTTCTCACTTTACAAGATAGCGTGTCCGATCTCAACGGCATGATCGCCATTTCCACTTCCTCGTCCGAGCACAGCTTCAAGGGCGAGGATTTAATCTCACTGGATGATCGGACGGGGGGAAATCCATCAATTGTTTGA 2178 50.37 MLNFSPISSYITCTLLLFSFSNTGIFDFTATVAAVEFDFGTVALSSLKLLGDAHLNNGSVGLTRDLAVPNSGSGRVLYAKPIRFRQPGIDYLASFSTFFSFSITNLNPSSIGGGLAFVISPDAETLGGAGGLLGLADERGLGFVAVEFDTLMDVEFKDINGNHVGLDLNEMVSLEVKDLDGIGIDLKSGDTVNSWIEYDGSARIFKIFVSYSNLKPTEPLMSFNLDLDPYLNDFMYVGFSGSTQGSTEVHSVDWWSFTSSFDSNSPPGSVPPPPTTTLMNPTANVVRSPPPSQPPSGSDSVTQKNSKSTTCHNGLCKQGAGAVVGVVTAGAFVLALFAGGLIWVYSKKIKRVKKSDSLASEIIKMPKEFTYKELKIATKCFNSNRIIGHGAFGTVYKGILPETGDIVAVKRCSHSTQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALAYLHQECENQVIHRDVKTSNIMLDEGFNARLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSFGAVVLEVASGRRPIEKETAAVGGGGKFGANSNLVDWVWSLHREGRLLTAADGRLGGEFEESEMRKILLVGLACSHPDPMTRPTMRGVVQMLIGDSEIPIVPRSKPSTSFSTAHLLLTLQDSVSDLNGMIAISTSSSEHSFKGEDLISLDDRTGGNPSIV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31752901 31755078 + Lsi03G020390.1 Lsi03g02039 659789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02039 725 Gene3D Transferase(Phosphotransferase) domain 1 457 663 - -
Lsi03g02039 725 SMART serkin_6 381 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02039 725 Gene3D Phosphorylase Kinase; domain 1 343 456 - -
Lsi03g02039 725 ProSiteProfiles Protein kinase domain profile. 381 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02039 725 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 22 706 - -
Lsi03g02039 725 Gene3D - 32 268 - -
Lsi03g02039 725 CDD STKc_IRAK 387 657 - -
Lsi03g02039 725 SUPERFAMILY Protein kinase-like (PK-like) 363 686 IPR011009 -
Lsi03g02039 725 CDD lectin_legume_LecRK_Arcelin_ConA 35 261 IPR001220 GO:0030246
Lsi03g02039 725 ProSitePatterns Legume lectins beta-chain signature. 144 150 IPR019825 -
Lsi03g02039 725 PANTHER - 22 706 - -
Lsi03g02039 725 Pfam Protein kinase domain 382 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02039 725 ProSitePatterns Protein kinases ATP-binding region signature. 387 410 IPR017441 GO:0005524
Lsi03g02039 725 MobiDBLite consensus disorder prediction 261 308 - -
Lsi03g02039 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Lsi03g02039 725 Pfam Legume lectin domain 36 264 IPR001220 GO:0030246
Lsi03g02039 725 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 270 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02039 Lsi-Chr3:31752901 Lsi05g00509 Lsi-Chr5:6389572 0 dispersed
Lsi03g02039 Lsi-Chr3:31752901 Lsi01g01442 Lsi-Chr1:12571048 5.56E-121 transposed
Lsi03g02039 Lsi-Chr3:31752901 Lsi03g02126 Lsi-Chr3:32450062 2.35E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83513 PF00069 Pkinase 5.00E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02039 - - bhj:120091585 1335.86