Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02053 ATGGAGCAAGCGTTCTCAGACTTCAATATTCCTGGAGATATCTTGGATTTGTACTTCCCCAGAACTGTTTTCAATGTCGAAAATGGATGGCTTAACCTCATTTCTCAGCTCATTTCTTTTTTTTCTTCTCCAGCAGGTCGGCATCTCTCTTCACAGGCCATTGATGATGGTCGTGGCATCTTTGTTTTGTCAATTGACTTTCAACAGTTCCGGAAGATTTGCGATCAACATGAGTTTTACATAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCAATTCATCAGGTAAAAACAAATTATTATGAGAATTTCATTCTTGTAATGAGGACCAAGTGGGTGCACAGTTTAGAAGATGTGACAAAAATTCTAGTCCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCGGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAATGTAAAAGCAATCTTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGCGCGTTGGATGGTTGTAAAAGCAAAACATTCAATCCTGTTCGATCGACCGCTGAAGCGATCGACTTTCAAAAAATACGATTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTAGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAGCCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGGCCCAATCTACACCTGAGGAGTTGCAAGATTCCAACTCTAATGCAAGAGCAACCGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGAGAATGTGGTTCGGATGTCTTCCGTCAAATACTTCAATCCATCTGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTAGTTGGTGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCGGCTGCAGCTGTTTCTCCTCGTGGTATTTATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGTTGTATAGATGAGTTCGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCAATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACATCCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGATTTGATTTAGTTTTTATATTGCTGGATAAACCCGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGGTAATTGGAACTTATAACCACCGAAAACGTACCATTGGGAGATCTATAAGAGGATATATGAATAAGATATTTGAGTGCTTGAAGAAATTATGGCCTAATGCTCAGCAACTTCATGCTGGATGTGGGGAACGCACCCCTGCAGCAAAAAGACTACGTAAAGATATATCCCCTTTGGCTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGGAGATGCTAGTTCAAAACACGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCGAAAGATGGTGATTTTGTACCATTACCCGGTCAACTTCTTCGCAAGTATATAGCCTATGCAAGAACTTTTGTATTCCCCAGGTAA 2019 40.71 MEQAFSDFNIPGDILDLYFPRTVFNVENGWLNLISQLISFFSSPAGRHLSSQAIDDGRGIFVLSIDFQQFRKICDQHEFYIMLEENPKVALKCMSAAIHQVKTNYYENFILVMRTKWVHSLEDVTKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNLTRIFPDGKFSPPSFCALDGCKSKTFNPVRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLYLEAVSIKNSKAQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGECGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYIRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSVIGTYNHRKRTIGRSIRGYMNKIFECLKKLWPNAQQLHAGCGERTPAAKRLRKDISPLALKNVAMENDGKGDASSKHESLVSRLRLDKAKDGDFVPLPGQLLRKYIAYARTFVFPR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31857777 31863048 + Lsi03G020530.1 Lsi03g02053 659803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02053 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 450 464 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 501 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 528 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 405 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 477 490 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 PANTHER DNA HELICASE MCM8 7 672 - -
Lsi03g02053 672 Pfam MCM P-loop domain 345 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 SUPERFAMILY Nucleic acid-binding proteins 57 271 IPR012340 -
Lsi03g02053 672 SMART mcm 137 663 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 Coils Coil 462 482 - -
Lsi03g02053 672 ProSiteProfiles MCM family domain profile. 347 554 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 Gene3D - 324 672 IPR027417 -
Lsi03g02053 672 SMART AAA_5 391 543 IPR003593 -
Lsi03g02053 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 579 IPR027417 -
Lsi03g02053 672 Pfam MCM OB domain 141 270 IPR033762 -
Lsi03g02053 672 Gene3D - 141 271 IPR012340 -
Lsi03g02053 672 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 7 672 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g02053 672 Gene3D - 168 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02053 Lsi-Chr3:31857777 Lsi11g01129 Lsi-Chr11:19722511 9.19E-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02053 K10737 - csv:101211972 1141.72