Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g02053 | ATGGAGCAAGCGTTCTCAGACTTCAATATTCCTGGAGATATCTTGGATTTGTACTTCCCCAGAACTGTTTTCAATGTCGAAAATGGATGGCTTAACCTCATTTCTCAGCTCATTTCTTTTTTTTCTTCTCCAGCAGGTCGGCATCTCTCTTCACAGGCCATTGATGATGGTCGTGGCATCTTTGTTTTGTCAATTGACTTTCAACAGTTCCGGAAGATTTGCGATCAACATGAGTTTTACATAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCAATTCATCAGGTAAAAACAAATTATTATGAGAATTTCATTCTTGTAATGAGGACCAAGTGGGTGCACAGTTTAGAAGATGTGACAAAAATTCTAGTCCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCGGCATATATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAATGTAAAAGCAATCTTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGCGCGTTGGATGGTTGTAAAAGCAAAACATTCAATCCTGTTCGATCGACCGCTGAAGCGATCGACTTTCAAAAAATACGATTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTAGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAGCCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGGCCCAATCTACACCTGAGGAGTTGCAAGATTCCAACTCTAATGCAAGAGCAACCGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGAGAATGTGGTTCGGATGTCTTCCGTCAAATACTTCAATCCATCTGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGTCATAGTAGTTGGTGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCGGCTGCAGCTGTTTCTCCTCGTGGTATTTATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGTTGTATAGATGAGTTCGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCAATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACATCCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGATTTGATTTAGTTTTTATATTGCTGGATAAACCCGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGGTAATTGGAACTTATAACCACCGAAAACGTACCATTGGGAGATCTATAAGAGGATATATGAATAAGATATTTGAGTGCTTGAAGAAATTATGGCCTAATGCTCAGCAACTTCATGCTGGATGTGGGGAACGCACCCCTGCAGCAAAAAGACTACGTAAAGATATATCCCCTTTGGCTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGGAGATGCTAGTTCAAAACACGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCGAAAGATGGTGATTTTGTACCATTACCCGGTCAACTTCTTCGCAAGTATATAGCCTATGCAAGAACTTTTGTATTCCCCAGGTAA | 2019 | 40.71 | MEQAFSDFNIPGDILDLYFPRTVFNVENGWLNLISQLISFFSSPAGRHLSSQAIDDGRGIFVLSIDFQQFRKICDQHEFYIMLEENPKVALKCMSAAIHQVKTNYYENFILVMRTKWVHSLEDVTKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNLTRIFPDGKFSPPSFCALDGCKSKTFNPVRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLYLEAVSIKNSKAQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGECGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYIRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSVIGTYNHRKRTIGRSIRGYMNKIFECLKKLWPNAQQLHAGCGERTPAAKRLRKDISPLALKNVAMENDGKGDASSKHESLVSRLRLDKAKDGDFVPLPGQLLRKYIAYARTFVFPR | 672 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 31857777 | 31863048 | + | Lsi03G020530.1 | Lsi03g02053 | 659803 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g02053 | 672 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 450 | 464 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 501 | 513 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 528 | 536 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 390 | 405 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 477 | 490 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | PANTHER | DNA HELICASE MCM8 | 7 | 672 | - | - | |
Lsi03g02053 | 672 | Pfam | MCM P-loop domain | 345 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | SUPERFAMILY | Nucleic acid-binding proteins | 57 | 271 | IPR012340 | - | |
Lsi03g02053 | 672 | SMART | mcm | 137 | 663 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | Coils | Coil | 462 | 482 | - | - | |
Lsi03g02053 | 672 | ProSiteProfiles | MCM family domain profile. | 347 | 554 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | Gene3D | - | 324 | 672 | IPR027417 | - | |
Lsi03g02053 | 672 | SMART | AAA_5 | 391 | 543 | IPR003593 | - | |
Lsi03g02053 | 672 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 357 | 579 | IPR027417 | - | |
Lsi03g02053 | 672 | Pfam | MCM OB domain | 141 | 270 | IPR033762 | - | |
Lsi03g02053 | 672 | Gene3D | - | 141 | 271 | IPR012340 | - | |
Lsi03g02053 | 672 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 7 | 672 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Lsi03g02053 | 672 | Gene3D | - | 168 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g02053 | Lsi-Chr3:31857777 | Lsi11g01129 | Lsi-Chr11:19722511 | 9.19E-78 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g02053 | K10737 | - | csv:101211972 | 1141.72 |