Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02054 ATGCAAATATGCACTTGTGAATCGTGCAAGCCTCTTTACTCGAAATCTATCCAAACCCCATCTCTCCATATTGGAATTAGGATGTCAAAGTCCGCAGCGGACATCTTGCAAAAATTTTATTTACGACTACGTGACCAGAATACATCAGCGGATGGTACACCAATTACAGCCAGGCAATTGGAAAGTTTGGTGAGGTTGGCAGAAGCTCGAGCACGTGTAGACCTCAGGGAAGAAATTACAGTACAAGATGCCATGGATGTGGTGGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGATGAACATGGGGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAGTTGCAGCAGAAAGACTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAAAATTGGTCTACGAGTACCTGACATCGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAAATATACCAGGTATAG 546 42.31 MQICTCESCKPLYSKSIQTPSLHIGIRMSKSAADILQKFYLRLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADKIGLRVPDIDTFIENLNSVGYLLKKGPKIYQV 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31863226 31864030 + Lsi03G020540.1 Lsi03g02054 659804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02054 181 Pfam MCM AAA-lid domain 23 95 IPR041562 -
Lsi03g02054 181 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 27 181 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi03g02054 181 PANTHER DNA HELICASE MCM8 27 181 - -
Lsi03g02054 181 Gene3D - 9 105 IPR027417 -
Lsi03g02054 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 101 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02054 Lsi-Chr3:31863226 Lsi11g00378 Lsi-Chr11:3882467 1.35E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02054 K10737 - csv:101211972 294.664