Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02057 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGTGAGCAGAGTCCGAGGTCTAATGTTCGCGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCCAAGGATGCTAAAGAAACTGTACAGGAATGTGTATCAGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATCCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGTTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGAAACAGTTGAAACTTTGTATATTATTATGGCTGTCTATTGGATTGGAGTTAGGACACAGTATTTAATAGAGGTTCCAAGTCCTGGGGATCCCATTTATTCATGA 609 44.01 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTPISQIAHQGSFSQGVNYASSQSQAQHLMVPMQETVETLYIIMAVYWIGVRTQYLIEVPSPGDPIYS 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31884978 31888389 - Lsi03G020570.1 Lsi03g02057 659807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02057 202 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982
Lsi03g02057 202 MobiDBLite consensus disorder prediction 117 136 - -
Lsi03g02057 202 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lsi03g02057 202 Gene3D Histone, subunit A 17 163 IPR009072 GO:0046982
Lsi03g02057 202 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Lsi03g02057 202 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Lsi03g02057 202 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Lsi03g02057 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Lsi03g02057 202 MobiDBLite consensus disorder prediction 1 28 - -
Lsi03g02057 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Lsi03g02057 202 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02057 Lsi-Chr3:31884978 Lsi10g00042 Lsi-Chr10:648177 2.03E-60 dispersed
Lsi06g01361 Lsi-Chr6:24173027 Lsi03g02057 Lsi-Chr3:31884978 9.81E-17 transposed
Lsi03g02057 Lsi-Chr3:31884978 Lsi04g00817 Lsi-Chr4:7784892 1.61E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25076 PF00808 CBFD_NFYB_HMF 1.10E-27 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02057 K08065 - csv:101212699 334.724