Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02058 ATGGCGAACTTGCCATATAGCATTTCTTACCATGTTGATTCTCAATATGAAATATGCATATCGATAAATCAAATGGCTGATTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTATCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATATATGACTTTAAGACACTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGTAACTTTGACAATAACAATGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGGCAACAATTGTCATATCTGACGCCAACACTATTGAGGTTCGAGAGCTCATATTTCTGGCTTCAACTCCTACTGTAAGTGTTTGTTTGTCAAATGCTACAACTGGACAGCCATTCATATCCACGCTTGAGCTCCGGCAATTTAATGGCTCTATCTACTATACTCAATTTGAGGATCAGTTTTACCTGAGTGTCGCAGCAAGGATTAATTTTGGAGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAATTTCCACTAAATTACCAATAGATGTAGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGAGTCCAACTGATACAAGAAAATTTAGGCTTGTACTTCCCGGAATGCCTGAAATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTATGAGCCTGGTTTTACCAACTTAACCTTCCCTTTTGTATTATCTTTTCGGTTTGGGAAAACCTCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAAATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTTCACCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACAACCAAGAATAGTTAAAATTTACTCTATCTACCTTTGGCACTTGGTTAGTTCATTGTCCAAAAAGAATTTGACGGGAAACATCCCTACAGACCTGGCCAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGATGCATGGACTTGAAAATCCTCCATCTCGAGAACAACCAGTTGACCGGAGAGCTGCCTTCCTCTTTAGCAAATCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCCTCTGGTCTTCTCAATAAAAACCTATTTTTGCGCGAGTTCATTACTCTCGACACTTGCCTTCACTATGTGCTCTCGTTCATTTACAGCTACTCTAGAAACATTAATCTCCACGAAGGGGGGAAAAAGAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTATCTTGCTATTTCTTGCAAAAAGGAAGAAAAAGATATCGTGAACAAGATCTACTTGAAGAATCCTTGCCTGTACAAAGATTTGCCTCTTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTAATGAAATTGAAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGATGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTCCAGGGAAGGCGAGAATTTGCAAACGAGAATCAGCTACTGCAACAGCAAGATGACTTGGACAAATTTAAACAACACCTCTACACAGACAATCCTAGGAAGGCTAAACCAGTCAATCAGAAATTCATATTTGTGGCTGATGGATTTCAATTGGTTTTGAAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTGCCAAGAACAAGACAGAAGTATGCTTATCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGGGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAAGATGCTGCTAGAGGGATTGAGTACCTTCATACAGGCTGTATTCCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCAAAGGTTTCAGACTTTGGTCTTTCGAAGCTTGCAGTGGATGGGGCCTCCCACGTGTCCAGTATCGTTCGGGGAACTGTAGGATATTTGGATCCAGAGTATTATATCTCTCAACAGTTAACAGACAAAAGCGATGTATATAGCTTTGGTGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAATGTAAACTTCGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATCGAGAGCGGGGATATTCAAGGAATCATCGATCCATCGCTGCGCAATGAATATGACATTCAATCGATGTGGAAAATCGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTGAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAGGATTCGATTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCTATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTATCGTTTGACGAATCCATTGCTCGACCTACTGCAAGATAG 2982 40.34 MANLPYSISYHVDSQYEICISINQMADLDCGGQESFTDDIGLEWVSDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWATIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTQFEDQFYLSVAARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKISTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLSPTDTRKFRLVLPGMPEISKAVVNIEENAQGKYRLYEPGFTNLTFPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFSPSDWDEGGDPCMPVPWSWLQCNSDPQPRIVKIYSIYLWHLVSSLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCMDLKILHLENNQLTGELPSSLANLPNLRELYVQNNMLSGTVPSGLLNKNLFLREFITLDTCLHYVLSFIYSYSRNINLHEGGKKNHVYIIVGSVIGAVVLLLATVVSCYFLQKGRKRYREQDLLEESLPVQRFASSKGDAPKETAHCFSVNEIEEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANENQLLQQQDDLDKFKQHLYTDNPRKAKPVNQKFIFVADGFQLVLKVTLLSRIHHRNLVQFLGYCQEQDRSMLIYEFMHNGTLKEHLYGPLTREKTISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREATATREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTAR 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31897116 31904619 - Lsi03G020580.1 Lsi03g02058 659808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02058 993 CDD STKc_IRAK 628 939 - -
Lsi03g02058 993 Gene3D Phosphorylase Kinase; domain 1 697 742 - -
Lsi03g02058 993 SUPERFAMILY Protein kinase-like (PK-like) 609 937 IPR011009 -
Lsi03g02058 993 SUPERFAMILY L domain-like 424 540 - -
Lsi03g02058 993 PANTHER TYROSINE KINASE DOMAIN PROTEIN 22 671 - -
Lsi03g02058 993 Pfam Malectin-like domain 28 358 IPR024788 -
Lsi03g02058 993 ProSiteProfiles Protein kinase domain profile. 622 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02058 993 Gene3D Ribonuclease Inhibitor 374 527 IPR032675 -
Lsi03g02058 993 PANTHER OS07G0107800 PROTEIN-RELATED 710 979 - -
Lsi03g02058 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Lsi03g02058 993 Gene3D Phosphorylase Kinase; domain 1 597 675 - -
Lsi03g02058 993 Gene3D Transferase(Phosphotransferase) domain 1 743 964 - -
Lsi03g02058 993 SMART serkin_6 622 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02058 993 PANTHER OS07G0107800 PROTEIN-RELATED 22 671 - -
Lsi03g02058 993 PANTHER TYROSINE KINASE DOMAIN PROTEIN 710 979 - -
Lsi03g02058 993 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Lsi03g02058 993 Pfam Protein tyrosine and serine/threonine kinase 710 871 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02084 Lsi-Chr2:27037997 Lsi03g02058 Lsi-Chr3:31897116 1.77E-24 dispersed
Lsi02g02085 Lsi-Chr2:27043210 Lsi03g02058 Lsi-Chr3:31897116 9.50E-62 dispersed
Lsi03g02058 Lsi-Chr3:31897116 Lsi04g00642 Lsi-Chr4:5893697 0 dispersed
Lsi03g02058 Lsi-Chr3:31897116 Lsi02g02962 Lsi-Chr2:35745867 9.99E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83514 PF12819 Malectin_like 3.10E-78 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02058 - - csv:101212456 1681.38