Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02059 ATGCTGGATCTTAACCTCGAAGTTGTTTCCTCTGAGTCGGCCTCCGATTCGGTTGAGATAGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCATCCTCCGTCGCTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCTGACGAGGCGTTCCCGTTCACCTTTGGTAAAGACTACGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCACCGCGATCAGACGATGGAGCTTTTTCCATTAACTGGCGGGTTATCTTCTGGTTCGAGTCCTCAGAAGCAGTGGCTGGAGGTTTCTCCACCGGAATTTGGTTATTGTGGTGGTGCGCCGCAGCGGGGAATAACCGCACCGCCGGCGCAGCAACAGCATCAGCCGATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACTTTTTATCGACGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCACATGCTGCTGCTAGGGCATATGATCGGGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCAATGGATTTTCAAGGGGAAGCTCGAAGTACAGAGGAGTCACTCTGCATAAATGTGGACGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAAGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAGCCAAGTTCTTATGTGGCAGAGATGACTTCTGAGACTGACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGCCCGACGTGAGAGCATTGGCATGTTTGGTAATGGTATTCATCACAGCTCACACGACATGCTTGTTGACAGAAGAGTTATGCCTGAGAACTCTGTTTCAGCAGCAATTGGATCATCTCAGCCATATGGCTCTGCAGTGCCTTCCAATTACCATTCTTCTTGGAATGTTTCAAATTCCGATTTCTTTCCCATCTCCAGGCATCATCAGGATTCCCTTCTTCTTCATCAACTGCCATTTCATCGGCATCACCAGCTGTTGGTGAAATCCATTTCCCAGCAATCTTCTACTGTAGGAGTTGAGCAGAAAGCACCAGGTAAGAATATTCTTCTAATTGCGCGAAAGTCGCATCGTGATCCTCTTCCAATCTTCACCGTAGGGCCTGTCCCTACGCCAGTTGAGACTCATCTCCACCCGCCTCGCCGGCCTCCGCCGTCACCTCCGCCTGCACCCTACCGATCTGTCTTCTCCATATCAAATGAAGTTCCAATCGTGTTGTCAGAAACAAAAAGACTTTTCGTCCCTGATCCACAAAGAATGATCGGTCATTTCAGGATTTCGTTGCAGATCAAGCAGAGATTGATCAGAACATTGAAGATGGCAATCGGTTCGAGAATTGAAGCTTCTGTTCTTTGTAGTTGCGGCTGGTGA 1677 47.94 MLDLNLEVVSSESASDSVEIVTERFLQFPANRMESAGSFNSSSVANGDLSASTTGDEDSSSNADEAFPFTFGKDYAVQESLTAKSLCVFDDHRDQTMELFPLTGGLSSGSSPQKQWLEVSPPEFGYCGGAPQRGITAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMTSETDTGENNQILDLNLGIAPPNLSDARRESIGMFGNGIHHSSHDMLVDRRVMPENSVSAAIGSSQPYGSAVPSNYHSSWNVSNSDFFPISRHHQDSLLLHQLPFHRHHQLLVKSISQQSSTVGVEQKAPGKNILLIARKSHRDPLPIFTVGPVPTPVETHLHPPRRPPPSPPPAPYRSVFSISNEVPIVLSETKRLFVPDPQRMIGHFRISLQIKQRLIRTLKMAIGSRIEASVLCSCGW 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31912674 31922926 - Lsi03G020590.1 Lsi03g02059 659809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02059 558 MobiDBLite consensus disorder prediction 134 161 - -
Lsi03g02059 558 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700|GO:0006355
Lsi03g02059 558 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700|GO:0006355
Lsi03g02059 558 SMART rav1_2 252 315 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 CDD AP2 251 311 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 406 - -
Lsi03g02059 558 SUPERFAMILY DNA-binding domain 251 310 IPR016177 GO:0003677
Lsi03g02059 558 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Lsi03g02059 558 MobiDBLite consensus disorder prediction 37 62 - -
Lsi03g02059 558 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 406 - -
Lsi03g02059 558 CDD AP2 159 217 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Lsi03g02059 558 Pfam AP2 domain 251 300 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02059 Lsi-Chr3:31912674 Lsi10g00523 Lsi-Chr10:7461585 1.75E-90 dispersed
Lsi01g01366 Lsi-Chr1:11847461 Lsi03g02059 Lsi-Chr3:31912674 3.20E-27 transposed
Lsi01g01365 Lsi-Chr1:11841693 Lsi03g02059 Lsi-Chr3:31912674 4.13E-06 wgd
Lsi10g01313 Lsi-Chr10:17329232 Lsi03g02059 Lsi-Chr3:31912674 3.05E-128 wgd
Lsi03g02059 Lsi-Chr3:31912674 Lsi04g00819 Lsi-Chr4:7812200 8.96E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25077 PF00847 AP2 1.60E-09 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02059 K09284 - csv:101211242 741.11