Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02064 ATGATTTGGATTCCTTGTTCAGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGATCAACGGGAAACTAAAAACAAATTCCTCCTTCAGTGAAACCTCCAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCCTTCCGAGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGAGAAGGAGGTTTTGGTAGAGTTTACAAAGGAAAGTTGGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTCGATCGCAATGGGTTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTTTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAGTTCTAGATTGGAATACTAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAATATTTGCATGACAAAGCTAGCCCGCCGGTTATTTATCGAGATTTGAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAACTGTCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGTACTTACGGATATTGCGCTCCAGAATATGCAATGACTGGTCAGTTAACTCTCAAGTCAGATGTTTATAGCTTCGGTGTTGTCCTTCTAGAAATCATAACAGGAAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAAAATCTGGTTTCTTGGGCAAGACCATTATTTAAAGACCGTCTGAGATTTGCGCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCTGTGATTGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAAAGATACGACCCTGGTACGAACATACCCCACGACTCCCCTGGATCTGCCTGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGGGGTAGAAGATATGACAGAAATCCAACTAAACGACTATAA 1188 42.09 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPINGKLKTNSSFSETSKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYDPGTNIPHDSPGSACTPPRTNRDSDRKLNGGRRYDRNPTKRL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31958333 31961197 + Lsi03G020640.1 Lsi03g02064 659814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02064 395 MobiDBLite consensus disorder prediction 355 372 - -
Lsi03g02064 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lsi03g02064 395 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lsi03g02064 395 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 383 - -
Lsi03g02064 395 Gene3D Transferase(Phosphotransferase) domain 1 148 358 - -
Lsi03g02064 395 Gene3D Phosphorylase Kinase; domain 1 45 147 - -
Lsi03g02064 395 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Lsi03g02064 395 SMART serkin_6 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02064 395 MobiDBLite consensus disorder prediction 15 51 - -
Lsi03g02064 395 MobiDBLite consensus disorder prediction 355 395 - -
Lsi03g02064 395 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02064 395 MobiDBLite consensus disorder prediction 31 50 - -
Lsi03g02064 395 PANTHER OS07G0668900 PROTEIN 1 383 - -
Lsi03g02064 395 CDD STKc_IRAK 77 345 - -
Lsi03g02064 395 Pfam Protein tyrosine and serine/threonine kinase 76 344 IPR001245 GO:0004672|GO:0006468
Lsi03g02064 395 MobiDBLite consensus disorder prediction 373 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01412 Lsi-Chr2:19511842 Lsi03g02064 Lsi-Chr3:31958333 0 dispersed
Lsi03g02064 Lsi-Chr3:31958333 Lsi05g01512 Lsi-Chr5:22909461 0 dispersed
Lsi01g00287 Lsi-Chr1:2543327 Lsi03g02064 Lsi-Chr3:31958333 5.78E-47 transposed
Lsi02g02078 Lsi-Chr2:26971747 Lsi03g02064 Lsi-Chr3:31958333 1.26E-163 transposed
Lsi03g01282 Lsi-Chr3:23652515 Lsi03g02064 Lsi-Chr3:31958333 1.30E-93 transposed
Lsi04g01809 Lsi-Chr4:25327852 Lsi03g02064 Lsi-Chr3:31958333 6.73E-162 transposed
Lsi06g00754 Lsi-Chr6:13984967 Lsi03g02064 Lsi-Chr3:31958333 7.85E-146 transposed
Lsi08g00783 Lsi-Chr8:16217990 Lsi03g02064 Lsi-Chr3:31958333 1.96E-139 transposed
Lsi09g00931 Lsi-Chr9:11577367 Lsi03g02064 Lsi-Chr3:31958333 1.30E-65 transposed
Lsi09g01752 Lsi-Chr9:26197883 Lsi03g02064 Lsi-Chr3:31958333 0 transposed
Lsi10g01319 Lsi-Chr10:17398309 Lsi03g02064 Lsi-Chr3:31958333 5.64E-156 wgd
Lsi03g02064 Lsi-Chr3:31958333 Lsi04g00826 Lsi-Chr4:7949316 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83515 PF07714 PK_Tyr_Ser-Thr 4.70E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02064 - - csv:101211491 742.651