Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02065 ATGGCGTCCGCCCACGTGGAAGAAATTTCACCTCTGTCGTTGGATGCCACCGCCGAACAACCTCCCCTGTTCGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATTATCCGGAATTACAAGGGACTACAACATAAAATTAAGCTAGTTCCTCTCAATCTTCTTAATAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATGAACAAGGTGCCATCTCTGGAACATAATGGGGAAGTCATTGGAGAAAGTCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCCGATCCTGCGAAAAGAGAGTACGCCGAAGAGTTGCTATCCTACAGCGAAACATTTAATGGTGCAATAATCGAATCGTTTAATGGTGACACCACAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAGATTGACATCACACAAGGAAGGCCTAAATTAGTTGCATGGATTGAGGAGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAGCTGGTCGTTGAAATTTATACAATGCGATTCTTGAGAAAATCCCGAAATCTTGCAGACCTTCTCCACCCGCTAATGGCGGAGAGGAGCATTCACATGCTCCACATTCTCGAGCCGAGAAGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGTATGCTAACATTTACAAGGAGGAGGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCATTTCAAGTGTGCCCTATTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCATCAAGAAGAGACCGAATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGCCTCAAAATCTGATTCTGTTGACACAACAGATAGTGTTCCTACAAAACTGTTAGAGCCGCCAGTAGAAACGCAAAAACGTGTTGTTCAGACTTGGTGTCAAACTAGGCCGTCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGAATATGAAAGATGAAAAGACAAGTAATGGTGGAGATCATCTTCCACCGCTAGAGGAGGCAGAATCGTTAGAAGGAACATCTATGGCAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCGTAGTACATCTGCTACAGAGGCAGAAAGTAGGATGGACGAATCCATTACTAACAGCGTGAAGCCCTCCGAGAGAGATGGCGTTGTGGACGATGGAGTTTCTCAAGATCAAATGTTTACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCAAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATCGAGAAATATTACCAGGATTTGTTGGATCAAGAAACTAATTCTAGTGCAGATAACGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGAACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTTGCATATGCTCTTCACAATCCCTCTGTTGGTTACTGTCAGGCAATGAATTTCTTTGCGGGCTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACATTGGTTGGAATAATAGATGACTATTTTGATGGATATTACACTGAGGAAATGATAGAATCGCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGGTCATACATTTTATCTTTATCCGCATCTTTCATTTTTCTTTGGCATGTATTTTTCACTAGAGACATCAGGGTCAGTTTGCTCATTTGTTGATGCTTTTGGTGCAGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTTCTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGGAACAGGGTCATGCTGTTTCGGACAGCACTTGCATTGATGGAATTATATGGTCCTGCATTAGTTACTACAAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCCGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTACTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTAATTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCTGGATCACCTATAGAGAGGAAAAAGACAGCTGCAGGAGCCGATGTAGGACCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAGAAAAGATCTGCAGTTCTAAGAGCTGAGGAGCTAGAAACGGCACTTATGGAAATGGTCACCCAAGATAATCGACGACTATTAAGTGCCAGGGTTGAACAACTGGAGATAGAGGTAGCAGGGCTAAAGAAAACTCTAGCAGAGAAGAAAGAACAAGAAGTTGCAATGCTTCAGTTGTTGATGCGTGTTGAACAAGAGCAAAGAGTAACCGAGGAAGCTAGAATAAACGCCGAGCAAGACGTAGCAGCTCAGAAATATGCTGTTCATATGCTTCAGGATAAATATGAGAAAGCTATGGCTTCACTTGCTGAGATGGAGAAAAGGGTGGTGATGGCCGAATCCATGTTGGAGGCTACATTACAATATGAATCTGGCCAAGTTAAAGCAATGTCATCTCCTGGGTCGCGTACTCAAGGATCTGCACTGGAAAATCAAAGAAAGGTTGGTTTGCTTCCATTTGCACTAGGCTGGCGAGATCGAAACAAGAATGGAAAGGCTTTTTCTTTGGGTGAAGAACCTAATTTTCAGAGTGGAGTTCAACAGCAGAGTGACCCGTTCAGGTAG 3204 43.57 MASAHVEEISPLSLDATAEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIKLVPLNLLNRPDWYKEKVYPMNKVPSLEHNGEVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYSETFNGAIIESFNGDTTKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITQGRPKLVAWIEEFNKIDAYKQTKVDPKLVVEIYTMRFLRKSRNLADLLHPLMAERSIHMLHILEPRRDAYGFALRPQHTHRYREYANIYKEEEEERCDKWKNFLDQVATSFQVCPIEEANTNTLQAETSEHQEETESGRSSTGDDSTASKSDSVDTTDSVPTKLLEPPVETQKRVVQTWCQTRPSLNAIEIMMSSRVKKKNMKDEKTSNGGDHLPPLEEAESLEGTSMANSEEEEACFSGALNRSTSATEAESRMDESITNSVKPSERDGVVDDGVSQDQMFTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNSSADNENNIPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLFAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLGHTFYLYPHLSFFFGMYFSLETSGSVCSFVDAFGAVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLLELREKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPGSPIERKKTAAGADVGPCTPNLDDFLSGLAGETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSARVEQLEIEVAGLKKTLAEKKEQEVAMLQLLMRVEQEQRVTEEARINAEQDVAAQKYAVHMLQDKYEKAMASLAEMEKRVVMAESMLEATLQYESGQVKAMSSPGSRTQGSALENQRKVGLLPFALGWRDRNKNGKAFSLGEEPNFQSGVQQQSDPFR 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31963867 31979044 - Lsi03G020650.1 Lsi03g02065 659815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02065 1067 Pfam Glutathione S-transferase, N-terminal domain 30 106 IPR004045 -
Lsi03g02065 1067 MobiDBLite consensus disorder prediction 318 369 - -
Lsi03g02065 1067 MobiDBLite consensus disorder prediction 391 406 - -
Lsi03g02065 1067 MobiDBLite consensus disorder prediction 335 354 - -
Lsi03g02065 1067 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 26 107 IPR004045 -
Lsi03g02065 1067 MobiDBLite consensus disorder prediction 1045 1067 - -
Lsi03g02065 1067 SMART tbc_4 486 745 IPR000195 -
Lsi03g02065 1067 SUPERFAMILY Thioredoxin-like 21 108 IPR036249 -
Lsi03g02065 1067 Gene3D - 617 773 - -
Lsi03g02065 1067 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 506 616 - -
Lsi03g02065 1067 SUPERFAMILY GST C-terminal domain-like 104 231 IPR036282 -
Lsi03g02065 1067 MobiDBLite consensus disorder prediction 434 454 - -
Lsi03g02065 1067 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 680 773 IPR035969 -
Lsi03g02065 1067 Pfam Rab-GTPase-TBC domain 679 739 IPR000195 -
Lsi03g02065 1067 Pfam Rab-GTPase-TBC domain 493 644 IPR000195 -
Lsi03g02065 1067 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 473 643 IPR035969 -
Lsi03g02065 1067 Pfam Glutathione S-transferase, C-terminal domain 143 205 - -
Lsi03g02065 1067 Gene3D - 105 234 - -
Lsi03g02065 1067 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 256 1009 - -
Lsi03g02065 1067 MobiDBLite consensus disorder prediction 391 467 - -
Lsi03g02065 1067 Coils Coil 905 960 - -
Lsi03g02065 1067 Gene3D Glutaredoxin 1 104 - -
Lsi03g02065 1067 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 256 1009 - -
Lsi03g02065 1067 MobiDBLite consensus disorder prediction 1053 1067 - -
Lsi03g02065 1067 SFLD Glutathione Transferase (cytosolic) 29 207 IPR040079 -
Lsi03g02065 1067 CDD GST_C_Lambda 111 227 - -
Lsi03g02065 1067 Coils Coil 968 995 - -
Lsi03g02065 1067 ProSiteProfiles TBC/rab GAP domain profile. 489 721 IPR000195 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02065 Lsi-Chr3:31963867 Lsi03g02067 Lsi-Chr3:31986884 5.66E-99 dispersed
Lsi03g02065 Lsi-Chr3:31963867 Lsi03g02066 Lsi-Chr3:31980418 4.09E-140 tandem
Lsi01g01350 Lsi-Chr1:11683296 Lsi03g02065 Lsi-Chr3:31963867 4.99E-23 transposed
Lsi04g00854 Lsi-Chr4:8304460 Lsi03g02065 Lsi-Chr3:31963867 5.31E-09 transposed
Lsi05g00364 Lsi-Chr5:4609965 Lsi03g02065 Lsi-Chr3:31963867 7.77E-07 transposed
Lsi10g00066 Lsi-Chr10:1108591 Lsi03g02065 Lsi-Chr3:31963867 2.73E-24 transposed
Lsi03g02065 Lsi-Chr3:31963867 Lsi04g00827 Lsi-Chr4:7969682 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02065 - - bhj:120091064 1437.94