Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02067 ATGTTAACTGTCGTACCGGAAGTTCGTCCGCCGTCATTGGAAGCTGACGCCGAGCAACCTTCGCTCTTTGACGGAACCGCCAGGTTGTATATGGCTTATTATTGCCCATTTGCACAACGTGCTTGGATCACAAGAAATTACAAGGGATTACATAATAAAATTAAATTAGTGCCTCTAAACCTTCAAAACAGGCCTGCCTGGTATAAGGAAAAAGTCAACCCCACAAACAAGGTTCCAGCATTGGAACACAATGGAAAAGTTATTGGAGAAAGCCTTGATTTGATCAAATACATAGAGAGCAACTTTGAAGGGCCTTCTCTATTCCCAGATGATCTTGCTAAAAGACAATTTGGTGAAGAGTTGCTAGCTTATACTGATACATTCACTGGGGCAGTGTACCCTTCATTTAAGGGTCCTCAATTTGATTACTTGGAGAATGCTCTGCAGAAATTTGATGATGGCCCATTCTTTTTGGGTCAATTCAGTTGGGTGGATATTGCATACATCACATTTATTGAAAGATTTCATGTATTCTTAAATGAAGTTTTCAAGTATGATATCACAGAAGGAAGACCTAATCTAGCCGCATGGATTGAGGAGTTCAACAAGATTGATGCTTACAAACAAACAAAATATGATCCTAAAGCGATTGTTGAACTTTACAAGAAGCGCTTCATGGCATTTCCGGGCTGCCTTGCCGACCTCATGGGGTCGGTTCTTTGTCTTTGTGTGCTGACCTTGAGCATGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTGTATACTGCTTACATCTGCCCCTATGCTCAACGTGTGTGGATCATCCGTAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTTAATAACAGGTATAAGGAGAAAGTATATCCTATAAACAAGGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAACAATACGTTTATCAGCGCAATAATCTCTTCTTTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCTTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATCCCATTTGTTGAAAGGTACCACGTTTTCTTATTTGAGGTTTTCAAGATTGACATCACTGAAGGAAGGCCTAAATTAGCTGCATGGATTGAGGACTTCAACAAGATTGATGCTTACAAGCAAACAAAATATGATCCTAAAGCCGTTGTTGAATATTACACAAAGCGCTTCATGGTACCATACACTTCTTAA 1338 40.88 MLTVVPEVRPPSLEADAEQPSLFDGTARLYMAYYCPFAQRAWITRNYKGLHNKIKLVPLNLQNRPAWYKEKVNPTNKVPALEHNGKVIGESLDLIKYIESNFEGPSLFPDDLAKRQFGEELLAYTDTFTGAVYPSFKGPQFDYLENALQKFDDGPFFLGQFSWVDIAYITFIERFHVFLNEVFKYDITEGRPNLAAWIEEFNKIDAYKQTKYDPKAIVELYKKRFMAFPGCLADLMGSVLCLCVLTLSMEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWIIRNYKGLQDKIKLVPLNLNNRYKEKVYPINKDPAKREYAEELLSYNNTFISAIISSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERYHVFLFEVFKIDITEGRPKLAAWIEDFNKIDAYKQTKYDPKAVVEYYTKRFMVPYTS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31986884 31996811 - Lsi03G020670.1 Lsi03g02067 659817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02067 445 PANTHER GLUTATHIONE S-TRANSFERASE L1 4 226 IPR044629 GO:0004364
Lsi03g02067 445 SUPERFAMILY GST C-terminal domain-like 318 439 IPR036282 -
Lsi03g02067 445 SUPERFAMILY Thioredoxin-like 23 107 IPR036249 -
Lsi03g02067 445 SFLD Main (cytGST) 28 201 - -
Lsi03g02067 445 Gene3D Glutaredoxin 2 103 - -
Lsi03g02067 445 SUPERFAMILY GST C-terminal domain-like 102 225 IPR036282 -
Lsi03g02067 445 SUPERFAMILY Thioredoxin-like 264 309 IPR036249 -
Lsi03g02067 445 Pfam Glutathione S-transferase, N-terminal domain 278 311 IPR004045 -
Lsi03g02067 445 Pfam Glutathione S-transferase, C-terminal domain 141 199 - -
Lsi03g02067 445 Pfam Glutathione S-transferase, C-terminal domain 351 413 - -
Lsi03g02067 445 SFLD Glutathione Transferase (cytosolic) 28 201 IPR040079 -
Lsi03g02067 445 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 246 321 - -
Lsi03g02067 445 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Lsi03g02067 445 Gene3D - 312 442 - -
Lsi03g02067 445 Gene3D - 104 228 - -
Lsi03g02067 445 CDD GST_C_Lambda 111 222 - -
Lsi03g02067 445 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 4 226 - -
Lsi03g02067 445 PANTHER GLUTATHIONE S-TRANSFERASE L1 246 321 IPR044629 GO:0004364
Lsi03g02067 445 PANTHER GLUTATHIONE S-TRANSFERASE L1 318 440 IPR044629 GO:0004364
Lsi03g02067 445 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Lsi03g02067 445 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 318 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02065 Lsi-Chr3:31963867 Lsi03g02067 Lsi-Chr3:31986884 5.66E-99 dispersed
Lsi03g02067 Lsi-Chr3:31986884 Lsi04g00829 Lsi-Chr4:8002650 1.22E-71 dispersed
Lsi03g02066 Lsi-Chr3:31980418 Lsi03g02067 Lsi-Chr3:31986884 4.52E-113 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02067 K00799 - csv:101210004 426.402