Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02069 ATGGTTAAACCCTGCTGGAAGCCTCATGATGATGGCGATTCAAACGGACGAGTTGATGGGTTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCGTTGAGTATGACCAATCCAGGTCCGCAGGGGACCTTTGTCGGAGTTTATGATGGCCATGGCGGAACCGAAGCTTCACGGTTTGTCAATGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTACACCAAAACATGACAGAGAACGTTATCAGGAAGGCTTTTGCTGCAACAGAAGAGGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTGGGGATCATATGCAATGGACAGCTATATATTGCAAATGCGGGCGATTCACGAGTAGTGCTTGGGAGAACAGAGAGAGCCACTAGAGAAGTCATTGCCATTCAATTGTCCACAGAACACAATGCAAGCATAGAGTCTGTAAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCCCAGATTGTGATCCTAAAGCACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGGTCGATTGGTGATGCATATTTGAAAAAAGCAAAGTTCAACAGACCTCCTCTCCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCGATCCTCAGCGCAGAACCATCAATACTGGTACACAAACTCCGCCAAGATGATCAATATCTCATATTTGCTTCTGATGGTCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCCCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAGAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCATCACTTGATCAATGGTAGGCCCTCCCTTTGTTCCTTGTCAATCAAAGGAGGAGAAGGTCTCCCCTCGTCGGCAAACTCCTAG 1113 45.19 MVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQNMTENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRQDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDHHLINGRPSLCSLSIKGGEGLPSSANS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32001668 32004622 - Lsi03G020690.1 Lsi03g02069 659819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02069 370 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 3 364 - -
Lsi03g02069 370 CDD PP2Cc 32 342 IPR001932 -
Lsi03g02069 370 Gene3D - 23 350 IPR036457 -
Lsi03g02069 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 364 - -
Lsi03g02069 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Lsi03g02069 370 Pfam Protein phosphatase 2C 64 311 IPR001932 -
Lsi03g02069 370 SUPERFAMILY PP2C-like 33 343 IPR036457 -
Lsi03g02069 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Lsi03g02069 370 SMART PP2C_4 12 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01736 Lsi-Chr3:28745448 Lsi03g02069 Lsi-Chr3:32001668 2.81E-54 dispersed
Lsi03g02069 Lsi-Chr3:32001668 Lsi10g00506 Lsi-Chr10:7237062 0 dispersed
Lsi03g02069 Lsi-Chr3:32001668 Lsi04g00830 Lsi-Chr4:8009578 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02069 K01102 - csv:101210750 709.909