Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02071 ATGTGTCTTCTTATCATGGAAAAGCCTAATATGCCACGGGTAAATTGGGATCCACATAAAAAGGTTCATATCTCTCTCCGGAATGAAAGAGCAATACGCTCACGAGATCCCATGATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCCTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCATCCAAGCTCCTCCCTTACCACCCTTCCATCGCCGCCATCTCCCCTCAAGACCTCGATGCCGCCGTCCTCCTCCTCCTCCTCTGTGAGGTTCGGCAACACAATCCAGCTGCCCTACGAACTCCGATCACCAAATGGCGCGCGACCCTCTGTAGAATCTACTCCGATTCAATATTGACGATCTCCGGTGTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGAGACGGTGGCGAGGTGTTGGAAATTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCTTCGCCTATGGCGGTGGTGGAGCTTCCGTCGGTGGCGGTGGGTGGTGGCGGTGCAGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGGGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACAATGTGTACATCTTCTGATGGAGATTAA 969 56.24 MCLLIMEKPNMPRVNWDPHKKVHISLRNERAIRSRDPMMEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARLLLSALRRLSRPFQSPSKLLPYHPSIAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSILTISGVATGGGGALIPYIETVARCWKFVGFVGSCGGKARREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCTSSDGD 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32015265 32017353 - Lsi03G020710.1 Lsi03g02071 659821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02071 322 SMART ring_2 248 288 IPR001841 -
Lsi03g02071 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 299 IPR013083 -
Lsi03g02071 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 38 317 - -
Lsi03g02071 322 Pfam Ring finger domain 247 289 IPR001841 -
Lsi03g02071 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 38 317 - -
Lsi03g02071 322 ProSiteProfiles Zinc finger RING-type profile. 248 289 IPR001841 -
Lsi03g02071 322 SUPERFAMILY RING/U-box 242 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02071 Lsi-Chr3:32015265 Lsi03g00197 Lsi-Chr3:2583162 4.95E-14 dispersed
Lsi03g02071 Lsi-Chr3:32015265 Lsi04g00895 Lsi-Chr4:8938365 1.83E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02071 - - csv:101209757 480.715