Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02079 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCCAGGTATTCCATCTCGTCGCCGTCGAGAACTCCGGTAGCGACTCCTCGCCGGAGCTTCAATGACGCGATGATCGAACAGAGCATCGAATCTGCCGCGGCGATTGTGATGAAATGGAATCCAGATTCTTCAACTTTCGCCAAAGTTACTTCCATGTTCTATGAAGACAAAACAGAAGCCATGCAGTTCATTAAGCGTGTGAATGATCTTCAAAAAGCGATGCATCTTATAGCTTCGGAAGATTCCGCTTCCGCTTCCGATCGCCTTGTTTACGCTCAAAGTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTTTATCAGATTCTCTCCATGAATCGTGCTCATCTTGATCCGGAATCTGTTTCCACTAGATCCTCTCGCTGCTCCACTAGATCGAGCACTTCCGTTGATTTCGACGATGACGGAACCCTAGAAGATGAAATCCAAGTCGTAGACGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTCCTTGTAATGGAGGATTTGCGAGCCATAGCTGAGTGTATGATCTCCTCTGGCTACGCTAAAGAGTGCGTTAATATGTACAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTGTACCGCCTTGGACTCGAGAAATTGAGCGCTTCGAGAATCAACAAAATGGATTGGGAGGTTCTTGATCTTAAAATCAAGAATTGGTTGGATGCAATTAAACTCGCAATTAGAACGCTGTTCGTTGGTGAACGAATTCTCTGCGATCACGTCTTTTCCTCTTCTGAATCCATTAGAGAATCCTGTTTTGCTGATATATCTAGAGAAGGCGCTCTGCTTCTGTTTGGATTCCCTGAACTTGTTGCAAAGAGTAAAAAATCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCGCCGAAAATTGGCCGGACATCGAATCGATTTTCTCGTCTGAATCCTCATCTGTAGTTCGATCTCAAGCTCTCACCTCACTCGTGAAACTCGGCGAGTTAGTCCGTGCCATAGTTATGGATCTCGAATTCTCGATTCAGAAAAATTCATCCAAATCGCCGGTTGCTGGCGGTGGCGTCCATTTCTTAACGCTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACGGCAATATTTTGACGGATATTTTCGCCGATTGGACTCCGCCTGAAAAATCCTCTCTCGAACAAATCTTCTTCAACAGTTCAGAATCCGACGATTCTCCAACGGCTTCAGCAATCTCTTTACGAATGGGATGGCTAATTCTTGTCCTCCTCTGCAAACTCGACAGCAAAGCGAAACGCTACAAAGACGTTTCACTCTCGTATCTGTTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTTCGATCATCGAATCTTCAGTACCTTCTCGGCGACGAGTGGATCACGAAGCAGGAGGCAAAAGTAAGGCAATTCGCAGCCAAGTACGAAGCATTGGCTTGGGGAAGAGTCTTCGATTCTTTGCCGGAGAATCCAACTGAGAAATTCTCACCGGAGGAAGCCAAAGAAATCTTCAGGAATTTCAATATGGCATTCCAGGAAACTCATCGGAAACAGAAATCCTGCTTCATTCCTGATTCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGTAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACAGAGCGCAAAAAGCTTATGCCGGTGGTAATGAAAAGCCGTACATCAGATTCTCCCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCATCCGATTGGGCGAGTGTTTCCACCTCTTCGCCGTCGTCTACCTCCTCCTCTCACCGGCGGGAACCGGGACCTCGTTAA 1920 45.16 MPRKGMRSLLFQFSSPSNSISRYSISSPSRTPVATPRRSFNDAMIEQSIESAAAIVMKWNPDSSTFAKVTSMFYEDKTEAMQFIKRVNDLQKAMHLIASEDSASASDRLVYAQSLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDDDGTLEDEIQVVDDSISEVEQVSFLVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSIAENWPDIESIFSSESSSVVRSQALTSLVKLGELVRAIVMDLEFSIQKNSSKSPVAGGGVHFLTLLSMNYLTFLADYGNILTDIFADWTPPEKSSLEQIFFNSSESDDSPTASAISLRMGWLILVLLCKLDSKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKQEAKVRQFAAKYEALAWGRVFDSLPENPTEKFSPEEAKEIFRNFNMAFQETHRKQKSCFIPDSKLRDEVKLSIGRKLVWFYGEFYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32073809 32075728 - Lsi03G020790.1 Lsi03g02079 659829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02079 639 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 622 IPR004140 GO:0000145|GO:0006887
Lsi03g02079 639 Pfam Exo70 exocyst complex subunit 249 609 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi03g02079 639 SUPERFAMILY Cullin repeat-like 76 611 IPR016159 -
Lsi03g02079 639 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 622 - -
Lsi03g02079 639 MobiDBLite consensus disorder prediction 617 639 - -
Lsi03g02079 639 Gene3D Exocyst complex component Exo70 65 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01397 Lsi-Chr2:19197156 Lsi03g02079 Lsi-Chr3:32073809 0 dispersed
Lsi03g02079 Lsi-Chr3:32073809 Lsi07g00662 Lsi-Chr7:7101373 2.74E-99 dispersed
Lsi01g01391 Lsi-Chr1:12047640 Lsi03g02079 Lsi-Chr3:32073809 3.78E-168 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi03g02079 Lsi-Chr3:32073809 0 wgd
Lsi03g02079 Lsi-Chr3:32073809 Lsi04g00846 Lsi-Chr4:8234422 4.90E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02079 K07195 - csv:101208543 1111.29