Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02089 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGTAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCACAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATATCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGAGGAGCTAGAAAATACTAACCAAGTTGAGCGTGGGGAGCTTACCTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATTTCAAGCGACGGAGTTCGCTGCCAGAATGACACGTCTCGAAATGACACTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTGGATGATGCTTGTACGGAAACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGCCCAAGCAAAATGGAATTGAAAATGTCGAAAAAGGTTTTACCAAACAATTATCCGTCGAATGTAAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATATATCTACGACAAGTGAGATGAAGCTAAATGGTATTATAAGTGGCGGAGGTTACATGTGCGGATGTTCGATATGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGATAAGGATGACGCGAAGCTTCCTAAATTGTCACATCCCATTGAGAGGCCAAACCCTAATTTTTCCAATCCGGTCATGCAACACAAGAAAACGGCCGAGAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATCAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGGGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACCGTTCTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTTTGAACGGGGCACAGATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAATGAAGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCCGGTCTTCTCAGGATATTTGGTCGTGATGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACATTGTACTTCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTTAGAAAGATGAGTGAAGAACAAGTAATTGACGAAGTATATGAGGGAGGTCCAGCTGACAATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGTCGACGTTATAACACTTCATGATTGCCAGAGGAAACAATCATCTCCTGGGAAGAGGAATTTTCGAGTGTTTGCTGTGTCTACGAATGAGGCTGCCGATTATTTGTCGGAGGCTCCGATTTTGATTCCTGATGGACCATGGAAGCAGATTACTGGAGGAGTTACTGCTGCAAAGGGGTTCAAAGCTGCAGGGCTATATGGTGGATTACGAGCAAAGGGAGAGAAACCTGACCTTGCACTTGTTACTTGTGATGTTGATGCCATTTCTGCTGGAGCATTTACAGAGAATGTAGTTGCTGCAGCACCAGTGTTGTATTGTAAAAAAGCATTGAGCATAACGGAAACGGCACGTGCAGTGTTAATAAATGCTGGTCAAGCGAATGCCGCTACGATCCTTCAAATAAGGCCAGAGGAAATACTAGTTGAATCTACTGGGGTGATTGGCCATAGAATAAAAAAGGATGCACTTTTGAATTCTCTTCCAAAACTAGTCAGATCCCTTTCATCTTCAGTTGAAGGTGCAGCTTCTGCAGCAGTAGCGATAACGACGACTGACCTTGTTAGTAAAAGCGTGGCAATCGAGTCCCAAGTTGGGGGCTCAACCATAAGAATTGGAGGAATGGCGAAAGGTTCAGGAATGATTCACCCGAATATGGCTACTATGCTTGGTGTTGTAACAACAGATGCTGTGGTTGCTAGTGATGTTTGGAGAAAGATGGTACAAATTTCTGTTGATCGAAGCTTCAATCAGATTACGGTGGATGGAGATACAAGTACCAACGACACCGTCATTGCTTTGTCGAGTGGCTTGTCGGGATCCAGATCTAATATAATTTCGTCATTGAAAAGTCGAGAAGCAGGACAGCTTCAAGAATGCCTTGACGTGGTGATGCAAGGCCTTGCCAAGTCAGTAGCCTGGGATGGAGAAGGAGCTACGTGTCTGATTGAGATTACAGTGACTGGTGCAAGTTCAGAAGCCGAAGCAGCAAAAGTTGCTCGTTCGGTAGCAGGCTCGTCGCTTTCAGCTATATATGGCCGGGATCCAAATTGGGGACGGATAGCAGCAGCTGCTGGGTACGCAGGGGTACCGTTCAACCAGATGAAACTCAAAGTGTCTCTAGGAAACATTCTCCTCATGGATGGAGGAGAACCCCAATCTTTTGACAGGGCTGCAGCCAGTAACTATCTCAGAAGAGCTGGAGAAACCCATGATACTGTCAGAATTTACATTTCCATAGGTGATGGGCAAGGAGAGGGACGGGCATGGGGTTGTGACTTGAGCTACGACTATGTCAAAATAAATGCAGAGTATACTACATAG 3840 44.11 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRNDTDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLNGIISGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKASFHQNSATIEVDKDDAKLPKLSHPIERPNPNFSNPVMQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALNEVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGRDVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNIVLPAAEDAESIWTKKLGFRKMSEEQVIDEVYEGGPADNLQWNIDAREGGAAVDVITLHDCQRKQSSPGKRNFRVFAVSTNEAADYLSEAPILIPDGPWKQITGGVTAAKGFKAAGLYGGLRAKGEKPDLALVTCDVDAISAGAFTENVVAAAPVLYCKKALSITETARAVLINAGQANAATILQIRPEEILVESTGVIGHRIKKDALLNSLPKLVRSLSSSVEGAASAAVAITTTDLVSKSVAIESQVGGSTIRIGGMAKGSGMIHPNMATMLGVVTTDAVVASDVWRKMVQISVDRSFNQITVDGDTSTNDTVIALSSGLSGSRSNIISSLKSREAGQLQECLDVVMQGLAKSVAWDGEGATCLIEITVTGASSEAEAAKVARSVAGSSLSAIYGRDPNWGRIAAAAGYAGVPFNQMKLKVSLGNILLMDGGEPQSFDRAAASNYLRRAGETHDTVRIYISIGDGQGEGRAWGCDLSYDYVKINAEYTT 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32162737 32178424 - Lsi03G020890.1 Lsi03g02089 659839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 57 118 - -
Lsi03g02089 1279 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Lsi03g02089 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 551 IPR013083 -
Lsi03g02089 1279 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 367 391 - -
Lsi03g02089 1279 PANTHER AUTOIMMUNE REGULATOR 365 815 - -
Lsi03g02089 1279 PANTHER AUTOIMMUNE REGULATOR 33 356 - -
Lsi03g02089 1279 SUPERFAMILY FYVE/PHD zinc finger 487 534 IPR011011 -
Lsi03g02089 1279 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 1 120 - -
Lsi03g02089 1279 Hamap Arginine biosynthesis bifunctional protein ArgJ [argJ]. 887 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 365 815 - -
Lsi03g02089 1279 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 356 - -
Lsi03g02089 1279 Pfam Tify domain binding domain 425 474 IPR032308 -
Lsi03g02089 1279 Pfam Tify domain binding domain 258 312 IPR032308 -
Lsi03g02089 1279 CDD OAT 897 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 SUPERFAMILY DmpA/ArgJ-like 898 1276 IPR016117 -
Lsi03g02089 1279 Gene3D - 717 821 - -
Lsi03g02089 1279 Gene3D - 890 1148 - -
Lsi03g02089 1279 TIGRFAM ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 890 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 Pfam PHD-finger 491 533 IPR019787 -
Lsi03g02089 1279 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Lsi03g02089 1279 SMART PHD_3 491 532 IPR001965 -
Lsi03g02089 1279 SMART PHD_3 570 627 IPR001965 -
Lsi03g02089 1279 Pfam ArgJ family 902 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 171 185 - -
Lsi03g02089 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 157 187 - -
Lsi03g02089 1279 Gene3D - 1149 1279 IPR042195 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 21 56 - -
Lsi03g02089 1279 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Lsi03g02089 1279 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 721 822 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02089 - - - csv:101207817 1563.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01970 Lsi-Chr3:31110745 Lsi03g02089 Lsi-Chr3:32162737 1.06E-12 dispersed
Lsi03g02089 Lsi-Chr3:32162737 Lsi10g01217 Lsi-Chr10:16457565 3.74E-06 dispersed
Lsi09g00010 Lsi-Chr9:80825 Lsi03g02089 Lsi-Chr3:32162737 1.82E-06 transposed
Lsi03g02089 Lsi-Chr3:32162737 Lsi04g00872 Lsi-Chr4:8531550 7.10E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g02089 . 18 815 PHD Transcription Factor Family AT3G53680 53.3 9.3e-242 833.6
Lsi04g00872 CCT,ECH 411 540 PHD Transcription Factor Family AT3G53680 54.6 1.1e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25080 PF01960 ArgJ 2.40E-121 CL0635 Lsi TR