Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02089 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGTAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCACAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATATCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGAGGAGCTAGAAAATACTAACCAAGTTGAGCGTGGGGAGCTTACCTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATTTCAAGCGACGGAGTTCGCTGCCAGAATGACACGTCTCGAAATGACACTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTGGATGATGCTTGTACGGAAACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGCCCAAGCAAAATGGAATTGAAAATGTCGAAAAAGGTTTTACCAAACAATTATCCGTCGAATGTAAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATATATCTACGACAAGTGAGATGAAGCTAAATGGTATTATAAGTGGCGGAGGTTACATGTGCGGATGTTCGATATGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGATAAGGATGACGCGAAGCTTCCTAAATTGTCACATCCCATTGAGAGGCCAAACCCTAATTTTTCCAATCCGGTCATGCAACACAAGAAAACGGCCGAGAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATCAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGGGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACCGTTCTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTTTGAACGGGGCACAGATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAATGAAGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCCGGTCTTCTCAGGATATTTGGTCGTGATGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACATTGTACTTCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTTAGAAAGATGAGTGAAGAACAAGTAATTGACGAAGTATATGAGGGAGGTCCAGCTGACAATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGTCGACGTTATAACACTTCATGATTGCCAGAGGAAACAATCATCTCCTGGGAAGAGGAATTTTCGAGTGTTTGCTGTGTCTACGAATGAGGCTGCCGATTATTTGTCGGAGGCTCCGATTTTGATTCCTGATGGACCATGGAAGCAGATTACTGGAGGAGTTACTGCTGCAAAGGGGTTCAAAGCTGCAGGGCTATATGGTGGATTACGAGCAAAGGGAGAGAAACCTGACCTTGCACTTGTTACTTGTGATGTTGATGCCATTTCTGCTGGAGCATTTACAGAGAATGTAGTTGCTGCAGCACCAGTGTTGTATTGTAAAAAAGCATTGAGCATAACGGAAACGGCACGTGCAGTGTTAATAAATGCTGGTCAAGCGAATGCCGCTACGATCCTTCAAATAAGGCCAGAGGAAATACTAGTTGAATCTACTGGGGTGATTGGCCATAGAATAAAAAAGGATGCACTTTTGAATTCTCTTCCAAAACTAGTCAGATCCCTTTCATCTTCAGTTGAAGGTGCAGCTTCTGCAGCAGTAGCGATAACGACGACTGACCTTGTTAGTAAAAGCGTGGCAATCGAGTCCCAAGTTGGGGGCTCAACCATAAGAATTGGAGGAATGGCGAAAGGTTCAGGAATGATTCACCCGAATATGGCTACTATGCTTGGTGTTGTAACAACAGATGCTGTGGTTGCTAGTGATGTTTGGAGAAAGATGGTACAAATTTCTGTTGATCGAAGCTTCAATCAGATTACGGTGGATGGAGATACAAGTACCAACGACACCGTCATTGCTTTGTCGAGTGGCTTGTCGGGATCCAGATCTAATATAATTTCGTCATTGAAAAGTCGAGAAGCAGGACAGCTTCAAGAATGCCTTGACGTGGTGATGCAAGGCCTTGCCAAGTCAGTAGCCTGGGATGGAGAAGGAGCTACGTGTCTGATTGAGATTACAGTGACTGGTGCAAGTTCAGAAGCCGAAGCAGCAAAAGTTGCTCGTTCGGTAGCAGGCTCGTCGCTTTCAGCTATATATGGCCGGGATCCAAATTGGGGACGGATAGCAGCAGCTGCTGGGTACGCAGGGGTACCGTTCAACCAGATGAAACTCAAAGTGTCTCTAGGAAACATTCTCCTCATGGATGGAGGAGAACCCCAATCTTTTGACAGGGCTGCAGCCAGTAACTATCTCAGAAGAGCTGGAGAAACCCATGATACTGTCAGAATTTACATTTCCATAGGTGATGGGCAAGGAGAGGGACGGGCATGGGGTTGTGACTTGAGCTACGACTATGTCAAAATAAATGCAGAGTATACTACATAG 3840 44.11 MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRNDTDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLNGIISGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKASFHQNSATIEVDKDDAKLPKLSHPIERPNPNFSNPVMQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALNEVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGRDVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNIVLPAAEDAESIWTKKLGFRKMSEEQVIDEVYEGGPADNLQWNIDAREGGAAVDVITLHDCQRKQSSPGKRNFRVFAVSTNEAADYLSEAPILIPDGPWKQITGGVTAAKGFKAAGLYGGLRAKGEKPDLALVTCDVDAISAGAFTENVVAAAPVLYCKKALSITETARAVLINAGQANAATILQIRPEEILVESTGVIGHRIKKDALLNSLPKLVRSLSSSVEGAASAAVAITTTDLVSKSVAIESQVGGSTIRIGGMAKGSGMIHPNMATMLGVVTTDAVVASDVWRKMVQISVDRSFNQITVDGDTSTNDTVIALSSGLSGSRSNIISSLKSREAGQLQECLDVVMQGLAKSVAWDGEGATCLIEITVTGASSEAEAAKVARSVAGSSLSAIYGRDPNWGRIAAAAGYAGVPFNQMKLKVSLGNILLMDGGEPQSFDRAAASNYLRRAGETHDTVRIYISIGDGQGEGRAWGCDLSYDYVKINAEYTT 1279
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 32162737 32178424 - Lsi03G020890.1 Lsi03g02089 659839
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 57 118 - -
Lsi03g02089 1279 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Lsi03g02089 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 551 IPR013083 -
Lsi03g02089 1279 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 367 391 - -
Lsi03g02089 1279 PANTHER AUTOIMMUNE REGULATOR 365 815 - -
Lsi03g02089 1279 PANTHER AUTOIMMUNE REGULATOR 33 356 - -
Lsi03g02089 1279 SUPERFAMILY FYVE/PHD zinc finger 487 534 IPR011011 -
Lsi03g02089 1279 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 1 120 - -
Lsi03g02089 1279 Hamap Arginine biosynthesis bifunctional protein ArgJ [argJ]. 887 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 365 815 - -
Lsi03g02089 1279 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 356 - -
Lsi03g02089 1279 Pfam Tify domain binding domain 425 474 IPR032308 -
Lsi03g02089 1279 Pfam Tify domain binding domain 258 312 IPR032308 -
Lsi03g02089 1279 CDD OAT 897 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 SUPERFAMILY DmpA/ArgJ-like 898 1276 IPR016117 -
Lsi03g02089 1279 Gene3D - 717 821 - -
Lsi03g02089 1279 Gene3D - 890 1148 - -
Lsi03g02089 1279 TIGRFAM ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 890 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 Pfam PHD-finger 491 533 IPR019787 -
Lsi03g02089 1279 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Lsi03g02089 1279 SMART PHD_3 491 532 IPR001965 -
Lsi03g02089 1279 SMART PHD_3 570 627 IPR001965 -
Lsi03g02089 1279 Pfam ArgJ family 902 1279 IPR002813 GO:0004358|GO:0006526
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 171 185 - -
Lsi03g02089 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 157 187 - -
Lsi03g02089 1279 Gene3D - 1149 1279 IPR042195 -
Lsi03g02089 1279 MobiDBLite consensus disorder prediction 21 56 - -
Lsi03g02089 1279 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Lsi03g02089 1279 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 721 822 IPR016181 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01970 Lsi-Chr3:31110745 Lsi03g02089 Lsi-Chr3:32162737 1.06E-12 dispersed
Lsi03g02089 Lsi-Chr3:32162737 Lsi10g01217 Lsi-Chr10:16457565 3.74E-06 dispersed
Lsi09g00010 Lsi-Chr9:80825 Lsi03g02089 Lsi-Chr3:32162737 1.82E-06 transposed
Lsi03g02089 Lsi-Chr3:32162737 Lsi04g00872 Lsi-Chr4:8531550 7.10E-46 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25080 PF01960 ArgJ 2.40E-121 CL0635 Lsi TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02089 - - csv:101207817 1563.13