Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g02089 | ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGTAAAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCTTTGCACAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATATCTCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGAGGAGCTAGAAAATACTAACCAAGTTGAGCGTGGGGAGCTTACCTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATTTCAAGCGACGGAGTTCGCTGCCAGAATGACACGTCTCGAAATGACACTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGAAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTGGATGATGCTTGTACGGAAACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGCCCAAGCAAAATGGAATTGAAAATGTCGAAAAAGGTTTTACCAAACAATTATCCGTCGAATGTAAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATATATCTACGACAAGTGAGATGAAGCTAAATGGTATTATAAGTGGCGGAGGTTACATGTGCGGATGTTCGATATGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGATAAGGATGACGCGAAGCTTCCTAAATTGTCACATCCCATTGAGAGGCCAAACCCTAATTTTTCCAATCCGGTCATGCAACACAAGAAAACGGCCGAGAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATCAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGGGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACCGTTCTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTTTGAACGGGGCACAGATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAATGAAGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCCGGTCTTCTCAGGATATTTGGTCGTGATGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACATTGTACTTCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTTAGAAAGATGAGTGAAGAACAAGTAATTGACGAAGTATATGAGGGAGGTCCAGCTGACAATCTTCAATGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGTCGACGTTATAACACTTCATGATTGCCAGAGGAAACAATCATCTCCTGGGAAGAGGAATTTTCGAGTGTTTGCTGTGTCTACGAATGAGGCTGCCGATTATTTGTCGGAGGCTCCGATTTTGATTCCTGATGGACCATGGAAGCAGATTACTGGAGGAGTTACTGCTGCAAAGGGGTTCAAAGCTGCAGGGCTATATGGTGGATTACGAGCAAAGGGAGAGAAACCTGACCTTGCACTTGTTACTTGTGATGTTGATGCCATTTCTGCTGGAGCATTTACAGAGAATGTAGTTGCTGCAGCACCAGTGTTGTATTGTAAAAAAGCATTGAGCATAACGGAAACGGCACGTGCAGTGTTAATAAATGCTGGTCAAGCGAATGCCGCTACGATCCTTCAAATAAGGCCAGAGGAAATACTAGTTGAATCTACTGGGGTGATTGGCCATAGAATAAAAAAGGATGCACTTTTGAATTCTCTTCCAAAACTAGTCAGATCCCTTTCATCTTCAGTTGAAGGTGCAGCTTCTGCAGCAGTAGCGATAACGACGACTGACCTTGTTAGTAAAAGCGTGGCAATCGAGTCCCAAGTTGGGGGCTCAACCATAAGAATTGGAGGAATGGCGAAAGGTTCAGGAATGATTCACCCGAATATGGCTACTATGCTTGGTGTTGTAACAACAGATGCTGTGGTTGCTAGTGATGTTTGGAGAAAGATGGTACAAATTTCTGTTGATCGAAGCTTCAATCAGATTACGGTGGATGGAGATACAAGTACCAACGACACCGTCATTGCTTTGTCGAGTGGCTTGTCGGGATCCAGATCTAATATAATTTCGTCATTGAAAAGTCGAGAAGCAGGACAGCTTCAAGAATGCCTTGACGTGGTGATGCAAGGCCTTGCCAAGTCAGTAGCCTGGGATGGAGAAGGAGCTACGTGTCTGATTGAGATTACAGTGACTGGTGCAAGTTCAGAAGCCGAAGCAGCAAAAGTTGCTCGTTCGGTAGCAGGCTCGTCGCTTTCAGCTATATATGGCCGGGATCCAAATTGGGGACGGATAGCAGCAGCTGCTGGGTACGCAGGGGTACCGTTCAACCAGATGAAACTCAAAGTGTCTCTAGGAAACATTCTCCTCATGGATGGAGGAGAACCCCAATCTTTTGACAGGGCTGCAGCCAGTAACTATCTCAGAAGAGCTGGAGAAACCCATGATACTGTCAGAATTTACATTTCCATAGGTGATGGGCAAGGAGAGGGACGGGCATGGGGTTGTGACTTGAGCTACGACTATGTCAAAATAAATGCAGAGTATACTACATAG | 3840 | 44.11 | MGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPEELENTNQVERGELTSACSGNSSSEDISSDGVRCQNDTSRNDTDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPSKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLNGIISGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKASFHQNSATIEVDKDDAKLPKLSHPIERPNPNFSNPVMQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALNEVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGRDVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNIVLPAAEDAESIWTKKLGFRKMSEEQVIDEVYEGGPADNLQWNIDAREGGAAVDVITLHDCQRKQSSPGKRNFRVFAVSTNEAADYLSEAPILIPDGPWKQITGGVTAAKGFKAAGLYGGLRAKGEKPDLALVTCDVDAISAGAFTENVVAAAPVLYCKKALSITETARAVLINAGQANAATILQIRPEEILVESTGVIGHRIKKDALLNSLPKLVRSLSSSVEGAASAAVAITTTDLVSKSVAIESQVGGSTIRIGGMAKGSGMIHPNMATMLGVVTTDAVVASDVWRKMVQISVDRSFNQITVDGDTSTNDTVIALSSGLSGSRSNIISSLKSREAGQLQECLDVVMQGLAKSVAWDGEGATCLIEITVTGASSEAEAAKVARSVAGSSLSAIYGRDPNWGRIAAAAGYAGVPFNQMKLKVSLGNILLMDGGEPQSFDRAAASNYLRRAGETHDTVRIYISIGDGQGEGRAWGCDLSYDYVKINAEYTT | 1279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 32162737 | 32178424 | - | Lsi03G020890.1 | Lsi03g02089 | 659839 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g02089 | 1279 | MobiDBLite | consensus disorder prediction | 57 | 118 | - | - | |
| Lsi03g02089 | 1279 | ProSitePatterns | Zinc finger PHD-type signature. | 571 | 626 | IPR019786 | - | |
| Lsi03g02089 | 1279 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 480 | 551 | IPR013083 | - | |
| Lsi03g02089 | 1279 | ProSiteProfiles | Zinc finger PHD-type profile. | 568 | 629 | IPR019787 | - | |
| Lsi03g02089 | 1279 | MobiDBLite | consensus disorder prediction | 367 | 391 | - | - | |
| Lsi03g02089 | 1279 | PANTHER | AUTOIMMUNE REGULATOR | 365 | 815 | - | - | |
| Lsi03g02089 | 1279 | PANTHER | AUTOIMMUNE REGULATOR | 33 | 356 | - | - | |
| Lsi03g02089 | 1279 | SUPERFAMILY | FYVE/PHD zinc finger | 487 | 534 | IPR011011 | - | |
| Lsi03g02089 | 1279 | ProSiteProfiles | Zinc finger PHD-type profile. | 489 | 534 | IPR019787 | - | |
| Lsi03g02089 | 1279 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
| Lsi03g02089 | 1279 | Hamap | Arginine biosynthesis bifunctional protein ArgJ [argJ]. | 887 | 1279 | IPR002813 | GO:0004358|GO:0006526 | |
| Lsi03g02089 | 1279 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 365 | 815 | - | - | |
| Lsi03g02089 | 1279 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 33 | 356 | - | - | |
| Lsi03g02089 | 1279 | Pfam | Tify domain binding domain | 425 | 474 | IPR032308 | - | |
| Lsi03g02089 | 1279 | Pfam | Tify domain binding domain | 258 | 312 | IPR032308 | - | |
| Lsi03g02089 | 1279 | CDD | OAT | 897 | 1279 | IPR002813 | GO:0004358|GO:0006526 | |
| Lsi03g02089 | 1279 | SUPERFAMILY | DmpA/ArgJ-like | 898 | 1276 | IPR016117 | - | |
| Lsi03g02089 | 1279 | Gene3D | - | 717 | 821 | - | - | |
| Lsi03g02089 | 1279 | Gene3D | - | 890 | 1148 | - | - | |
| Lsi03g02089 | 1279 | TIGRFAM | ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase | 890 | 1279 | IPR002813 | GO:0004358|GO:0006526 | |
| Lsi03g02089 | 1279 | Pfam | PHD-finger | 491 | 533 | IPR019787 | - | |
| Lsi03g02089 | 1279 | ProSitePatterns | Zinc finger PHD-type signature. | 492 | 531 | IPR019786 | - | |
| Lsi03g02089 | 1279 | SMART | PHD_3 | 491 | 532 | IPR001965 | - | |
| Lsi03g02089 | 1279 | SMART | PHD_3 | 570 | 627 | IPR001965 | - | |
| Lsi03g02089 | 1279 | Pfam | ArgJ family | 902 | 1279 | IPR002813 | GO:0004358|GO:0006526 | |
| Lsi03g02089 | 1279 | MobiDBLite | consensus disorder prediction | 171 | 185 | - | - | |
| Lsi03g02089 | 1279 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 569 | 629 | IPR013083 | - | |
| Lsi03g02089 | 1279 | MobiDBLite | consensus disorder prediction | 157 | 187 | - | - | |
| Lsi03g02089 | 1279 | Gene3D | - | 1149 | 1279 | IPR042195 | - | |
| Lsi03g02089 | 1279 | MobiDBLite | consensus disorder prediction | 21 | 56 | - | - | |
| Lsi03g02089 | 1279 | SUPERFAMILY | FYVE/PHD zinc finger | 569 | 624 | IPR011011 | - | |
| Lsi03g02089 | 1279 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 721 | 822 | IPR016181 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01970 | Lsi-Chr3:31110745 | Lsi03g02089 | Lsi-Chr3:32162737 | 1.06E-12 | dispersed | |
| Lsi03g02089 | Lsi-Chr3:32162737 | Lsi10g01217 | Lsi-Chr10:16457565 | 3.74E-06 | dispersed | |
| Lsi09g00010 | Lsi-Chr9:80825 | Lsi03g02089 | Lsi-Chr3:32162737 | 1.82E-06 | transposed | |
| Lsi03g02089 | Lsi-Chr3:32162737 | Lsi04g00872 | Lsi-Chr4:8531550 | 7.10E-46 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25080 | PF01960 | ArgJ | 2.40E-121 | CL0635 | Lsi | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g02089 | - | - | csv:101207817 | 1563.13 |