Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02101 TTTGCTCCCTTCCTCCTCCTTCTTCCTTCCTCCCTTTTTTTTTCTCTCTCTTCTCTTGATGTGATTCTCCACTATTTATCTCTCCCCAAAACCCATCAACCTTTACAAAAGAGAAAGAGAACCCAGAAAAACACCATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAATAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCTCCACCGCTGCCGCCACCTCCACCGCCTCCTCCCCCACCACCCCATGGCCTCGGTGGTGCCGGTTCAATCCGTCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGAAACGTCCCGGTTGGGGGTGGATGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATCGGTGGTTTCAGCTATGGCGGTGGCCTCTCAGCTCCCACCACTGCCACCGGTGACCTGAGTTTCCAATTAGGCAACACTAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCGGTGGCGGCGGAGACGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAACTTAACTCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGTTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1152 50.35 FAPFLLLLPSSLFFSLSSLDVILHYLSLPKTHQPLQKRKRTQKNTMNFSSIPAYLDPSNWQQQVTHQVGSNSSTGVSSQLLPPPLPPPPPPPPPPPHGLGGAGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAPTTATGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSGGGGDGPGPGWQMRPKLPSSSRNLTQMGNSVKMEETPDQVNNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32272111 32273711 - Lsi03G021010.1 Lsi03g02101 659851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02101 383 MobiDBLite consensus disorder prediction 300 330 - -
Lsi03g02101 383 ProSiteProfiles Zinc finger Dof-type profile. 126 180 IPR003851 GO:0003677|GO:0006355
Lsi03g02101 383 MobiDBLite consensus disorder prediction 184 219 - -
Lsi03g02101 383 MobiDBLite consensus disorder prediction 62 79 - -
Lsi03g02101 383 Pfam Dof domain, zinc finger 125 180 IPR003851 GO:0003677|GO:0006355
Lsi03g02101 383 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 49 379 - -
Lsi03g02101 383 ProSitePatterns Zinc finger Dof-type signature. 128 164 IPR003851 GO:0003677|GO:0006355
Lsi03g02101 383 MobiDBLite consensus disorder prediction 62 107 - -
Lsi03g02101 383 SUPERFAMILY Formin homology 2 domain (FH2 domain) 86 96 - -
Lsi03g02101 383 MobiDBLite consensus disorder prediction 80 100 - -
Lsi03g02101 383 MobiDBLite consensus disorder prediction 167 225 - -
Lsi03g02101 383 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 379 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01417 Lsi03g02101 CCT
Lsi01g01417 Lsi03g02101 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01651 Lsi-Chr2:22311974 Lsi03g02101 Lsi-Chr3:32272111 1.04E-52 dispersed
Lsi03g02101 Lsi-Chr3:32272111 Lsi01g00304 Lsi-Chr1:2722870 7.23E-35 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi03g02101 Lsi-Chr3:32272111 6.46E-47 wgd
Lsi10g01367 Lsi-Chr10:17825835 Lsi03g02101 Lsi-Chr3:32272111 1.15E-46 wgd
Lsi03g02101 Lsi-Chr3:32272111 Lsi04g00882 Lsi-Chr4:8680085 1.86E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25081 PF02701 zf-Dof 4.10E-32 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02101 - - csv:101207082 494.197