Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02114 ATGGGTTGTAATCTCGATCAATATGCATTGTTCCAGAACCGTCACTTCCTGTCTCACGATCTCTCTCTCCCTCATCACTCTCAGCATCTCTCTCTCTCTCTTGATCCCATTCCTCTCTCTCTCTCGCTCGAGTCCCTCACTCCGGCTAACGTTCGCCCTGCACCGCCGCCGCTAGCCCCTTGCACCGCCGCTGCCCATATCACGAGAGAGCAGATCTCTCTCTATCTCTCATCGTGTCTACTGCTCCCCCCAGCGCCGTCGTACCTCAAGTCGCCGTCTCACCTCCAGTCGCCGCACGCAGCATCATCCCTCCACGCTGCCATCTGCAGCGCTCACATCCCGATCAGGCGACGGCAAGGCTGCTCTGACGCTCACATCCTCGTTCCGGCGAGTGAACCTGTCATTTTTGGGTTTCAAAACGCTTTAGTCTTGTGCCCCACTATCCAAAAGATCTTAGATTCGTTTACCTGCGACCCAGCGAGTCTGAACGGTGAAATCAAGTCGTTTCGTAGTCAATCCGGCAAGGATTCGGATCGCGTTGGGTCACTAATTTTTACCTTCAGAATTGTTTTAGTTTGGGCCAAGGTTCCCTTAAGCCAAAATACCATTTTGCGTCATAACTTTCAAGAATTTAATTGCCTTCTCCCCGATCCATCACCAAGTAACATTGCCTCAAGTTCCAGTATTATAACCTCATCTTCTAATGGTGCAAGTCATGAGGAAGATTATCTGGAAGATTTTGATTTTTCTGATGCTGTTTTGACATTCATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCTGAGAAATCATTCTATGATGTCCTTGGGAAAAAATATCCTCCTTCCCCAGAGCCAAATAGATCTCTGGCCAATCAATACAGTGATAGCTTGAATGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAATGGTTACAGTAAGACTTCTTATTGTGGTGATGATAATCATTTTCAAACTCTGAGTGAAGATGTATTTCAGATCAGAAGCACTTTAGGTGATACAATTTCTCCATCATCTAATAGTTCCTCAAATAGTATAATTAGTGGGGCTGATGGTTGGGTGGACTTCTCGAATAATACAATTCAAGTTCCTGAGCCTAATAACAGAAGCCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAACTTGTGTCTTGATTTTGAGGTAAATGGGTCAGCAACTCAGGGTTCGGACGAGGGAACGAGCCAGATATATTTGAAGGCAGCAAGAAAGGATCAGAGGAATATTTTGTCACTTGAATCACGTGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCGGCTGTATTTACAGAGTCGACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCTGGAGAGGGGCATGAACGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAAATAAAAGTGTCTAATGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAGAGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGGGATGGAAGCCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTAGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGTCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACCATAATGATTGCTGCAGAGAATGCAACTAAGCTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGGTGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGTCCCGCAGAGAGAGTTGAGGAGACAGGTCGTCGGTTGGCGACCTATGCAGAGAGTTTCAACGTGCCATTTGAGTACAATGCTATAGCCAAAAAATGGGAAACTATTACTGTTGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCAAAAAATTTGCTTGATGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGGTGCACAAAATTAGTCCTAACTTATTCATCAGTGGCTTTGTCAATGGAGCATATAATGCTCCTTTCTTTGTTACCCGATTTCGAGAAGCTTTGTTTCACTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGTGAGGATTGGGAGAGAATGCTGTTGGAGAGAGAGATATTTGGGAGGGAGGCTCTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTGATCCTGAGATTTTTGAGAGGGCAGTTGAAAAGGTGCGGTCAAGTTACCACAGAGATTTTCTGATTGATGAAGATAGCAGATGGATACTGCAGGGATGGAAAGGTCGAATTATATATGCCATCTCTGCATGGAAACCTTCTGTAGAGTAA 2766 43.85 MGCNLDQYALFQNRHFLSHDLSLPHHSQHLSLSLDPIPLSLSLESLTPANVRPAPPPLAPCTAAAHITREQISLYLSSCLLLPPAPSYLKSPSHLQSPHAASSLHAAICSAHIPIRRRQGCSDAHILVPASEPVIFGFQNALVLCPTIQKILDSFTCDPASLNGEIKSFRSQSGKDSDRVGSLIFTFRIVLVWAKVPLSQNTILRHNFQEFNCLLPDPSPSNIASSSSIITSSSNGASHEEDYLEDFDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYDVLGKKYPPSPEPNRSLANQYSDSLNEELCGDSSNYLNGYSKTSYCGDDNHFQTLSEDVFQIRSTLGDTISPSSNSSSNSIISGADGWVDFSNNTIQVPEPNNRSQSIWQFQKGFEEASKFLPGGNNLCLDFEVNGSATQGSDEGTSQIYLKAARKDQRNILSLESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLCSAGEGHERLVSFRQELHNAKIKSMLQSGQIKVSNGGRGRRKKQSGKREVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLATYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLDESVATESARNTVLRLVHKISPNLFISGFVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFDPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISAWKPSVE 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32371065 32375712 + Lsi03G021140.1 Lsi03g02114 659864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02114 921 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 918 IPR005202 -
Lsi03g02114 921 PANTHER SCARECROW-LIKE PROTEIN 9 187 918 - -
Lsi03g02114 921 MobiDBLite consensus disorder prediction 448 473 - -
Lsi03g02114 921 Pfam GRAS domain family 546 917 IPR005202 -
Lsi03g02114 921 ProSiteProfiles GRAS family profile. 537 917 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02114 Lsi-Chr3:32371065 Lsi10g00057 Lsi-Chr10:977937 3.73E-73 dispersed
Lsi02g02480 Lsi-Chr2:31270283 Lsi03g02114 Lsi-Chr3:32371065 3.05E-36 transposed
Lsi10g01389 Lsi-Chr10:18010515 Lsi03g02114 Lsi-Chr3:32371065 0 wgd
Lsi02g01346 Lsi-Chr2:17994281 Lsi03g02114 Lsi-Chr3:32371065 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25083 PF03514 GRAS 1.70E-116 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02114 - - csv:101205887 1318.14