Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02127 ATGAAAAAGACAATCGGATGCTTGTGTCTTCCCATGTTGAATCTCTGTTTCCTTTCTTTCTTGGCCATTTTCTTTTCCGCCGTCCCCGCCGCATCTCAAGAGCTCTTCTACGCCGGATTTCGCGATGCCACAGCCGCTGCCAATTTAACCCTACCGGATATCGCGAAGATAGAGCATAGTGGAATCTTAAAGCTCACAAACGACGCCACTCGGATACAGGGCCATGTGTTCTACGAATCCCCTGTTCGCTTCAAAGACTCTACCAACGCCAAATCTTTTTCCTTCTCTACCACTTTTGTCTTCGCCATTGTCCCCGAGTACCCGACCCTTGGCGGTCATGGCCTCGCCTTCACCATTGCACCCTCCAAAAACCTCCATGGACTTCCCTCCCAGTATTTAGGCCTTCTCAATGCCACCAATTTCGGAAACTTCTCGAACCATTTATTCGCCGTCGAGTTCGACACCGTTCAAGATCTTGATTTCGACGACATCAATGACAACCACGTCGGAATCAATCTCAATAGTATGATCTCCCACGCCTCTTCCACTGTCTCTTATTTCATCGCCGACGGCCCCTCTAAGCAATTTGTAAACCTTAAAAGTGGGATACCGATTCAAGCTTGGATTGATTACGATGCCTCTGTAAATTCCCTCACGGTGGCGATTTCTCCGTTTTCGACTAAACCAAAGAAGCCGATTCTGTCGTTAAATGTAGATCTCTCTCCGATTCTTCATGAGTTTATGTTCATTGGGTTCTCAGCCTCCACTGGACTGCTTGCAAGTTCTCACTATCTGTTGGGTTGGAGTTTCAGTATGAATGGAGCAGCCAAGTCTCTGAATATTGATTCTCTGCCTCCAGTTTCCGGGCCGAAGAAAACATACTCTGATTTAGCAATTGGGATTTCAATTCTCCTCGTTTTGATTGTGATAACTGGAATCTTTGTTACTCTTTACAAAATCTCAAAGAAGATAGAAATAATCGAAGCCTGGGAGCTTGAAATTGGCCCGCATCGGTACTCTTACAAGGAACTGGAGCAAGCAACGAAACAATTTAGCGACAGAGAGGTACTTGGGCGGGGAGGATTTGGAAAAGTTTACAAAGGAACATTGCCGAATTCGAAAACCCAAGTGGCTGTGAAGCGAATTTCCCACGAATCGAAACAGGGCCTTCGCGAATTTATGTCGGAGATTACAATCATTGGTCGGCTTCGTCACAGGAACTTGGTTCAATTATTGGGATGGTGTCGCCGCCGCGACGATGGGGATTTGCTGCTTGTTTATGAGTTTATGGCAAACGGCAGTTTGGATAACTACATATTCGGCAAACCAAAAGTCGTTCTGAGTTGGAAACAGAGGTTTAAGATCATAAAGGACGTTGCTTCCGGCCTTTTGTACTTGCACGAAGGATACGAACAGGTGGTCGTCCATAGAGATGTGAAAGCTAGCAATGTTTTGCTCGACGATGAGATGAACGGAAAACTCAGCGATTTCGGCCTCGCCAAACTCTATGAACACGGCGAGAACCCGGCAACGACTCGGGTCGTCGGAACTGTGGGCTATCTGGCGCCGGAGCTGCACAGAACCGGAAAAGCCACAACTAACTCCGATGTTTACGCGTTCGGCGCACTCGTGCTCGAAGTGGCCTGCGGCCGCCGGCCGATTGGCTCGAGGGCGGCGCCAGAGGAGATGGTGCTGGTGGATTGGGTTTGGGAGAAGTACGCGGAAGGGAAATTACTGGAAGTAATGGATCAGAAATTGAAGGGGGATTTCAATGAGGTTGAGGCAATGATGATTTTGAAATTGGGGTTGGTCTGTTCGAAGGATTCAGCGGCGGCGAGGCCGAGCATGCGTCTGGTGGTGCGGTATTTGGACGGCGAGATTGGTGTTCCCGACGAGATAACGGGACCGAGAATGGTGGAAGGAGGAAATGAATTAGTGCATTCGTCGAGTGAAAATAGAGACATCAGTTTTGCTTTATCCATTTCTTCTCTTTCGCTTCTAAATGGCAGAAGTTGA 2016 48.07 MKKTIGCLCLPMLNLCFLSFLAIFFSAVPAASQELFYAGFRDATAAANLTLPDIAKIEHSGILKLTNDATRIQGHVFYESPVRFKDSTNAKSFSFSTTFVFAIVPEYPTLGGHGLAFTIAPSKNLHGLPSQYLGLLNATNFGNFSNHLFAVEFDTVQDLDFDDINDNHVGINLNSMISHASSTVSYFIADGPSKQFVNLKSGIPIQAWIDYDASVNSLTVAISPFSTKPKKPILSLNVDLSPILHEFMFIGFSASTGLLASSHYLLGWSFSMNGAAKSLNIDSLPPVSGPKKTYSDLAIGISILLVLIVITGIFVTLYKISKKIEIIEAWELEIGPHRYSYKELEQATKQFSDREVLGRGGFGKVYKGTLPNSKTQVAVKRISHESKQGLREFMSEITIIGRLRHRNLVQLLGWCRRRDDGDLLLVYEFMANGSLDNYIFGKPKVVLSWKQRFKIIKDVASGLLYLHEGYEQVVVHRDVKASNVLLDDEMNGKLSDFGLAKLYEHGENPATTRVVGTVGYLAPELHRTGKATTNSDVYAFGALVLEVACGRRPIGSRAAPEEMVLVDWVWEKYAEGKLLEVMDQKLKGDFNEVEAMMILKLGLVCSKDSAAARPSMRLVVRYLDGEIGVPDEITGPRMVEGGNELVHSSSENRDISFALSISSLSLLNGRS 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32454582 32456839 - Lsi03G021270.1 Lsi03g02127 659877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02127 671 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 18 645 - -
Lsi03g02127 671 Pfam Protein tyrosine and serine/threonine kinase 355 621 IPR001245 GO:0004672|GO:0006468
Lsi03g02127 671 CDD STKc_IRAK 357 625 - -
Lsi03g02127 671 Pfam Legume lectin domain 35 284 IPR001220 GO:0030246
Lsi03g02127 671 SUPERFAMILY Protein kinase-like (PK-like) 333 636 IPR011009 -
Lsi03g02127 671 Gene3D Transferase(Phosphotransferase) domain 1 430 633 - -
Lsi03g02127 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 287 IPR013320 -
Lsi03g02127 671 ProSiteProfiles Protein kinase domain profile. 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02127 671 Gene3D - 34 273 - -
Lsi03g02127 671 SMART serkin_6 351 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02127 671 CDD lectin_legume_LecRK_Arcelin_ConA 37 274 IPR001220 GO:0030246
Lsi03g02127 671 Gene3D Phosphorylase Kinase; domain 1 336 429 - -
Lsi03g02127 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Lsi03g02127 671 PANTHER - 18 645 - -
Lsi03g02127 671 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01447 Lsi03g02127 CCT
Lsi01g01447 Lsi03g02127 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02127 Lsi-Chr3:32454582 Lsi03g02130 Lsi-Chr3:32463610 0 dispersed
Lsi05g01286 Lsi-Chr5:20658998 Lsi03g02127 Lsi-Chr3:32454582 6.02E-13 dispersed
Lsi06g01590 Lsi-Chr6:26295136 Lsi03g02127 Lsi-Chr3:32454582 3.39E-173 dispersed
Lsi03g02126 Lsi-Chr3:32450062 Lsi03g02127 Lsi-Chr3:32454582 0 tandem
Lsi03g02127 Lsi-Chr3:32454582 Lsi03g02128 Lsi-Chr3:32460184 1.73E-09 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83518 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02127 - - csv:101204442 1050.43