Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02130 ATGGCCCAACTCTGTTTTCTCTGTTTCTTCTTCTTCCTCTGCGTCGCCGGCCCCGCCGCATCTCAGCAGCTATACTTCGCTGGATTTCAGAACGCCGCCGCCGCCAACTTAACCCTCACAGACATTGCCAAGATCGAGCAGAACGGAATCTTAAAGCTCACAAATGACACCAGTCGATTACAGGGTCATGCCTTTTACAGTTCCCCTGTTCGCTTCAAAAACTCCTCCGGCGGCAAAGCTTTTTCGTTCTCCACCGCTTTTGTCATCGCCGTCGTCCCCGAGTACCCGACCCTAGGTGGTCATGGCCTCGCCTTCACCATTGCCCACTCGAAGAACCTCCGTGGACTTCCCAGTCAGTATTTAGGTCTTCTCAATGCGACCGACGTCGGAAACTTCACGAACCATCTCTTTGCCGTCGAGTTCGACACCGTTCAAGATTTTGAGTTCGGCGACATCAACGACAACCACGTCGGAATCAATCTCAACAATATGGTTTCCAATGCCTCCACCACCGCTTCCTACTTCGTCGACGATGGACCCACCAAGCAGAATCTAACCCTAAAAAGTGGGAGGCCGATTCAAGCTTGGATCGATTATGATTCCTCTGTAAATTCACTCACAGTGGCGCTTTCTCCGTTTTCAACCAAACCCAAGAAGCCGATTCTGTCGTTTAATGTAGATCTCTCTCCGATTCTTCAGGAGACTATGTTCGTTGGGTTCTCGGCCTCAACTGGGCTTCTTGCAAGTTCTCACTATGTGCTGGGATGGAGTTTCAGTATGAATGGACCAGCCCAGTCTCTGGATCTTTCTTCTCTGCCTTCTGTTCCAGGTCCGAGGAAGAAGCATACTGCTTTTACAATTGGGGTTTCTGTTGCGGCCGTTTTGATTGTGGTAATCGCCATTTGTGTTGCTGCTTTAATCATTTGGAAGATAAAAAACGCTGATATAATCGAGGCCTGGGAGCACGAAATTGGCCCTCATCGGTACTCATACAAGGAGCTCAAGCAAGCGACTAAGCGATTTAGGGATAAAGAGCTCCTAGGGCGCGGTGGGTTTGGGAAAGTTTACAAAGGGACTTTGCCGAATTCGAAAACCCAAGTGGCTGTGAAGCGAATTTCTCACGAATCGAAACAGGGCCTAAGGGAATTTGTGTCGGAAATCGCTAGCATTGGCCGGCTTCGTCACCGGAACTTGGTTCAGTTGCTGGGATGGTGTCGCCGCCGTGGCGATCTGCTTCTGGTTTATGACTTTATGGCTAATGGGAGCTTGGATAACTACATTTTTGACGACCCGGATGTGAATCTGAGCTGGGAACAAAGATTCAGAATCATTAAAGGCGTCGCCTCCGGTTTGCTCTACTTGCACGAAGGCTACGAGCAGGTGGTGATTCATAGAGATGTGAAAGCCAGTAATGTCCTGCTCGACGGCGAGATGAATGGGAAGCTAGGCGATTTCGGCCTCGCTCGGCTATATGAACATGGGGCAAACCCGAGCACGACTCGTGTCGTCGGAACTCTGGGATATCTGGCACCGGAGCTACCTAGAACAGGAAAAGCCACCACCAGCTCAGATGTGTATGCCTTCGGCGCACTTCTGCTAGAAGTAGCCTGCGGGCGGCGGCCGATCGACCCGAAATCTTCGTCGGAAGAGCTGGTGCTGGTGGATTGGGTGTGGGAGAACTACAGGGAAGAGAAATTGCTGGAAGTAATGGATCCAAAACTGAAAGGGGATTTCAATGTAGCTGAGGCAGTGATGATTTTGAAACTGGGGTTGTTTTGTTCGAACGACTCGGCGGCGGCGCGGCCGAGTATGAGGCAGGTGGTGAGGTTTCTGGAGGGGGAGAATGGAGTTCCTGAGGAGATATCAGCGCCGAAAGTGGTGGAAGGAGGGAGGAACGGTGAAGGGTTCGATGATTTTGTGAATTCGTTTGCTTCTTCTTCGTTTAACAAGTTTAGTTCTTATTCATCGACTGGAAATCGGGATATGGATATGAGTTTTGCTTCATTTTCAACTTCTCCTCTGTCGCTTCTCAATGGCAGAGACTAA 2046 50.24 MAQLCFLCFFFFLCVAGPAASQQLYFAGFQNAAAANLTLTDIAKIEQNGILKLTNDTSRLQGHAFYSSPVRFKNSSGGKAFSFSTAFVIAVVPEYPTLGGHGLAFTIAHSKNLRGLPSQYLGLLNATDVGNFTNHLFAVEFDTVQDFEFGDINDNHVGINLNNMVSNASTTASYFVDDGPTKQNLTLKSGRPIQAWIDYDSSVNSLTVALSPFSTKPKKPILSFNVDLSPILQETMFVGFSASTGLLASSHYVLGWSFSMNGPAQSLDLSSLPSVPGPRKKHTAFTIGVSVAAVLIVVIAICVAALIIWKIKNADIIEAWEHEIGPHRYSYKELKQATKRFRDKELLGRGGFGKVYKGTLPNSKTQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDDPDVNLSWEQRFRIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDGEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVACGRRPIDPKSSSEELVLVDWVWENYREEKLLEVMDPKLKGDFNVAEAVMILKLGLFCSNDSAAARPSMRQVVRFLEGENGVPEEISAPKVVEGGRNGEGFDDFVNSFASSSFNKFSSYSSTGNRDMDMSFASFSTSPLSLLNGRD 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32463610 32465983 - Lsi03G021300.1 Lsi03g02130 659880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02130 681 Gene3D - 21 261 - -
Lsi03g02130 681 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Lsi03g02130 681 PANTHER - 5 669 - -
Lsi03g02130 681 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Lsi03g02130 681 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02130 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 669 - -
Lsi03g02130 681 CDD lectin_legume_LecRK_Arcelin_ConA 26 262 IPR001220 GO:0030246
Lsi03g02130 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 280 IPR013320 -
Lsi03g02130 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Lsi03g02130 681 SUPERFAMILY Protein kinase-like (PK-like) 322 624 IPR011009 -
Lsi03g02130 681 CDD STKc_IRAK 347 613 - -
Lsi03g02130 681 Gene3D Transferase(Phosphotransferase) domain 1 418 626 - -
Lsi03g02130 681 Pfam Protein kinase domain 342 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02130 681 ProSiteProfiles Protein kinase domain profile. 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02130 681 Pfam Legume lectin domain 23 272 IPR001220 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01442 Lsi-Chr1:12571048 Lsi03g02130 Lsi-Chr3:32463610 0 dispersed
Lsi01g01446 Lsi-Chr1:12591891 Lsi03g02130 Lsi-Chr3:32463610 2.44E-34 dispersed
Lsi01g01447 Lsi-Chr1:12598290 Lsi03g02130 Lsi-Chr3:32463610 2.93E-162 dispersed
Lsi03g02126 Lsi-Chr3:32450062 Lsi03g02130 Lsi-Chr3:32463610 0 dispersed
Lsi03g02127 Lsi-Chr3:32454582 Lsi03g02130 Lsi-Chr3:32463610 0 dispersed
Lsi03g02130 Lsi-Chr3:32463610 Lsi03g02241 Lsi-Chr3:33415119 0 dispersed
Lsi08g00532 Lsi-Chr8:13287602 Lsi03g02130 Lsi-Chr3:32463610 2.01E-109 dispersed
Lsi11g01564 Lsi-Chr11:23925398 Lsi03g02130 Lsi-Chr3:32463610 1.96E-153 dispersed
Lsi03g02128 Lsi-Chr3:32460184 Lsi03g02130 Lsi-Chr3:32463610 7.36E-06 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83519 PF00069 Pkinase 4.60E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02130 - - csv:101223168 1244.57