Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02150 ATGGCTGAGGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGCGACAAGCTCCGGGAACATCCGGAGCAGCAGCGTTCGAATTTCCTCCCTTTTTACGACCCTTCTTCTTCCGACTCCTCGAATCGCTTCCAATTTCAGCACCACCCTTTTTTCGACCCCCAAATCCAATCCCCTCTTTTACCCGAAATCGCTTCCTTCCCAGCCGAACCTCTCTCCCTTTCCCTCTCCTCTCACCCCTTTCTCGCTTCCCCTATTCCAGCTCCTCTCCCTCTTGGCCCTTTCACCGGCTATGCTTCCATTTTGAAAGGCTCCAGGTTTCTGAAGCCAGCCCATCACTTGCTACAGGACCTCTGTGATTCTGTTCATTCTTCTCATTCTGCTTTCCTCCATGATCCTTCCTCTGATTCCTTCCCCCATTCCCCAATTCTTGACCATCATCATCCTCTTCCTTCTTCTGATTCTTCTACCCCTCCTCATAAATCCACCCTTCTTTCTATGCTTGATGAGGTTTATAGGAAATATAAGCAGTACTATCAACAAATCCAGGATGTAATGACATCATTCGAGTACATCTCCGGGCTCGGGAATGCGGCACCGTATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGAGCAACTTCAATTCAATAAGAAGACTCATGGTGACTTCAATCAAAGATCCGTTCAGAACCCGGGATTTCTCGATCATCAGCCTGTTTGGCGACCGCAACGAGGGCTTCCCGAACGAGCAGTAACTGTTCTTCGTGCTTGGTTGTTCGAACATTTTTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATAAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACCAAGCAACAAACACAGAAGAATTTACATAGAGAAGATCGAAACGCCAACAAGGCAAACGATCATCATATTCCATCGAACTCGCTCGCAATGGATAACCCCTCTACATCTGCTCAACAAATTCAAGATACTCCTTCCAAACGCACCCGAAACGAACCTCATGACATGCCAATGGGAAATCACAGTGAGTCCTTGAACGTATCTTACAACTTGTCGAGCCATCCCCATGTAGGCACAAACACAAACTTGGCGGGCAACAACAATGGTGGAGTTTCCTTAACTCTTGGTCTTCATCAGAACAATGGCATAGGTGGCTTTTCCGAACCCTTCCCTGTAGGGTTCCCTGTTGCAGCTACTCGACGTTTTGGCCTCGGAATCCAAGGCAACAACGACGGGTACGTAATGGGTGGACATTTTAGTAGAGATGTTCTTGGAGGTCAGTTGTTACATGACTTTGTAGGGTGA 1431 46.82 MAEGIESYDHVPQQSRRDKLREHPEQQRSNFLPFYDPSSSDSSNRFQFQHHPFFDPQIQSPLLPEIASFPAEPLSLSLSSHPFLASPIPAPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHSSHSAFLHDPSSDSFPHSPILDHHHPLPSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQDVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILEQLQFNKKTHGDFNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQTQKNLHREDRNANKANDHHIPSNSLAMDNPSTSAQQIQDTPSKRTRNEPHDMPMGNHSESLNVSYNLSSHPHVGTNTNLAGNNNGGVSLTLGLHQNNGIGGFSEPFPVGFPVAATRRFGLGIQGNNDGYVMGGHFSRDVLGGQLLHDFVG 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32633290 32637018 - Lsi03G021500.1 Lsi03g02150 659900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02150 476 MobiDBLite consensus disorder prediction 339 383 - -
Lsi03g02150 476 CDD homeodomain 253 314 IPR001356 GO:0003677
Lsi03g02150 476 Pfam Associated with HOX 103 222 IPR006563 -
Lsi03g02150 476 MobiDBLite consensus disorder prediction 1 43 - -
Lsi03g02150 476 MobiDBLite consensus disorder prediction 142 162 - -
Lsi03g02150 476 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 53 437 - -
Lsi03g02150 476 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Lsi03g02150 476 SMART prehox3 98 224 IPR006563 -
Lsi03g02150 476 Gene3D - 256 318 - -
Lsi03g02150 476 SMART HOX_1 253 317 IPR001356 GO:0003677
Lsi03g02150 476 MobiDBLite consensus disorder prediction 10 26 - -
Lsi03g02150 476 SUPERFAMILY Homeodomain-like 255 320 IPR009057 -
Lsi03g02150 476 MobiDBLite consensus disorder prediction 343 368 - -
Lsi03g02150 476 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Lsi03g02150 476 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 437 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01477 Lsi03g02150 CCT
Lsi01g01477 Lsi03g02150 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01817 Lsi-Chr3:29661765 Lsi03g02150 Lsi-Chr3:32633290 9.62E-63 dispersed
Lsi03g02150 Lsi-Chr3:32633290 Lsi10g00402 Lsi-Chr10:6095589 2.20E-46 dispersed
Lsi03g00020 Lsi-Chr3:394554 Lsi03g02150 Lsi-Chr3:32633290 4.60E-69 transposed
Lsi01g01477 Lsi-Chr1:12841800 Lsi03g02150 Lsi-Chr3:32633290 8.12E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25085 PF07526 POX 1.90E-28 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02150 - - csv:101221128 832.402