Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02162 ATGGGGCCTCAAGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTTTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGATTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCGGTGGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAATGAGGTTGAGTTAACAGAGCAATCTAATGACTCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTACTTGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCACTTCAATGTGCCCTCGTAA 696 45.55 MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFDFVSQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNDSNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32751721 32755228 - Lsi03G021620.1 Lsi03g02162 659912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02162 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Lsi03g02162 231 MobiDBLite consensus disorder prediction 1 25 - -
Lsi03g02162 231 PANTHER ZINC FINGER, RING-CH-TYPE 8 231 - -
Lsi03g02162 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Lsi03g02162 231 PANTHER OS01G0850200 PROTEIN 8 231 - -
Lsi03g02162 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
Lsi03g02162 231 SUPERFAMILY RING/U-box 104 161 - -
Lsi03g02162 231 SMART ringv_2 106 159 IPR011016 GO:0008270
Lsi03g02162 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01511 Lsi03g02162 CCT
Lsi01g01511 Lsi03g02162 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02162 Lsi-Chr3:32751721 Lsi04g01909 Lsi-Chr4:26252798 4.26E-12 dispersed
Lsi09g00118 Lsi-Chr9:1138493 Lsi03g02162 Lsi-Chr3:32751721 5.17E-12 transposed
Lsi11g01724 Lsi-Chr11:25314337 Lsi03g02162 Lsi-Chr3:32751721 3.60E-30 transposed
Lsi01g01511 Lsi-Chr1:13172600 Lsi03g02162 Lsi-Chr3:32751721 2.39E-64 wgd
Lsi02g01315 Lsi-Chr2:17603512 Lsi03g02162 Lsi-Chr3:32751721 5.00E-48 wgd
Lsi03g00338 Lsi-Chr3:4021559 Lsi03g02162 Lsi-Chr3:32751721 5.54E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02162 - - csv:101218915 427.557