Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g02162 | ATGGGGCCTCAAGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTTTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGATTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCGGTGGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAATGAGGTTGAGTTAACAGAGCAATCTAATGACTCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTACTTGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCACTTCAATGTGCCCTCGTAA | 696 | 45.55 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFDFVSQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNDSNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32751721 | 32755228 | - | Lsi03G021620.1 | Lsi03g02162 | 659912 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g02162 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - | |
Lsi03g02162 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lsi03g02162 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 231 | - | - | |
Lsi03g02162 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
Lsi03g02162 | 231 | PANTHER | OS01G0850200 PROTEIN | 8 | 231 | - | - | |
Lsi03g02162 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
Lsi03g02162 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
Lsi03g02162 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
Lsi03g02162 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g01511 | Lsi03g02162 | CCT | |
Lsi01g01511 | Lsi03g02162 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g02162 | Lsi-Chr3:32751721 | Lsi04g01909 | Lsi-Chr4:26252798 | 4.26E-12 | dispersed | |
Lsi09g00118 | Lsi-Chr9:1138493 | Lsi03g02162 | Lsi-Chr3:32751721 | 5.17E-12 | transposed | |
Lsi11g01724 | Lsi-Chr11:25314337 | Lsi03g02162 | Lsi-Chr3:32751721 | 3.60E-30 | transposed | |
Lsi01g01511 | Lsi-Chr1:13172600 | Lsi03g02162 | Lsi-Chr3:32751721 | 2.39E-64 | wgd | |
Lsi02g01315 | Lsi-Chr2:17603512 | Lsi03g02162 | Lsi-Chr3:32751721 | 5.00E-48 | wgd | |
Lsi03g00338 | Lsi-Chr3:4021559 | Lsi03g02162 | Lsi-Chr3:32751721 | 5.54E-71 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g02162 | - | - | csv:101218915 | 427.557 |