Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02162 ATGGGGCCTCAAGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTCAGCGGTAGTGACTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGAGGAGGGTTCGTGTTATTCTCAGTTTTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGATTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCGGTGGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCATGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGCCATTCCATTGCACGGAACATTCTCGGACCAAATGAGGTTGAGTTAACAGAGCAATCTAATGACTCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTACTTGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCACTTCAATGTGCCCTCGTAA 696 45.55 MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDAEEGSCYSQFFSTNGGSYDEYRFDFVSQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNDSNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32751721 32755228 - Lsi03G021620.1 Lsi03g02162 659912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02162 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Lsi03g02162 231 MobiDBLite consensus disorder prediction 1 25 - -
Lsi03g02162 231 PANTHER ZINC FINGER, RING-CH-TYPE 8 231 - -
Lsi03g02162 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Lsi03g02162 231 PANTHER OS01G0850200 PROTEIN 8 231 - -
Lsi03g02162 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
Lsi03g02162 231 SUPERFAMILY RING/U-box 104 161 - -
Lsi03g02162 231 SMART ringv_2 106 159 IPR011016 GO:0008270
Lsi03g02162 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02162 - - - csv:101218915 427.557
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01511 Lsi03g02162 CCT
Lsi01g01511 Lsi03g02162 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02162 Lsi-Chr3:32751721 Lsi04g01909 Lsi-Chr4:26252798 4.26E-12 dispersed
Lsi09g00118 Lsi-Chr9:1138493 Lsi03g02162 Lsi-Chr3:32751721 5.17E-12 transposed
Lsi11g01724 Lsi-Chr11:25314337 Lsi03g02162 Lsi-Chr3:32751721 3.60E-30 transposed
Lsi01g01511 Lsi-Chr1:13172600 Lsi03g02162 Lsi-Chr3:32751721 2.39E-64 wgd
Lsi02g01315 Lsi-Chr2:17603512 Lsi03g02162 Lsi-Chr3:32751721 5.00E-48 wgd
Lsi03g00338 Lsi-Chr3:4021559 Lsi03g02162 Lsi-Chr3:32751721 5.54E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g828 . . . . Bpe04g01820 Bpe03g01022 Bma04g01279 . Cmo06g00261 Cmo14g00095 . Cma07g01034 . Car07g01016 . . Cpe08g01193 Bhi03g02093 Tan03g0855 Cmetu08g0797 . Hepe04g0791 . . Cla04g00736 Cam04g0750 Cec04g0877 Cco04g0927 Clacu04g0794 Cmu04g0782 Cre04g0837 Cone3ag0384 Cone10ag0353 Cone13ag1373 Cone19ag1368 Lsi01g01511 . . Cme04g02676 Blo07g01162 Blo09g00251 Bda03g01381 Bda05g00947 . . . . Sed02g0773 . Cmo07g01079 Cma06g00260 Cma14g00100 Car06g00229 Car14g00080 Cpe03g00081 Cpe19g00305 Bhi11g01900 Tan08g2063 Cmetu12g1939 . Hepe05g0126 . . Cla10g02055 Cam10g2129 Cec10g2171 . Clacu10g2134 Cmu10g2878 Cre10g2275 Lsi03g02162 Csa03g03129 Chy04g02201 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00931 . 82 598 C3H Transcription Factor Family AT2G31510 72.6 2.1e-225 778.5
Lsi08g00360 . 86 512 C3H Transcription Factor Family AT2G31510 79.9 7.3e-215 743.4
Lsi11g00931 . 51 572 C3H Transcription Factor Family AT2G31770 53.1 9.4e-163 570.5
Lsi08g00360 . 17 505 C3H Transcription Factor Family AT2G31770 53.8 2.1e-154 542.7
Lsi11g00931 . 65 557 C3H Transcription Factor Family AT2G31760 54.7 1.2e-162 570.1
Lsi08g00360 . 74 512 C3H Transcription Factor Family AT2G31760 57.8 7.6e-154 540.8
Lsi01g01180 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 6.9e-47 184.1
Lsi01g01180 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 6.9e-47 184.1
Lsi03g00188 . 81 300 C3H Transcription Factor Family AT3G02290 62.7 1.3e-73 273.1
Lsi06g00932 . 2 324 C3H Transcription Factor Family AT1G11020 70.4 6.2e-130 460.7
Lsi07g00675 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.8e-68 255.0
Lsi01g01995 . 2 324 C3H Transcription Factor Family AT5G08750 59.2 7.6e-100 360.9
Lsi03g00937 . 1 482 C3H Transcription Factor Family AT3G16090 63.4 2.8e-161 565.5
Lsi03g00188 . 77 300 C3H Transcription Factor Family AT5G38895 56.0 3.4e-70 262.3
Lsi08g01421 . 16 227 C3H Transcription Factor Family AT1G19310 67.0 1.8e-78 289.3
Lsi01g01051 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 1.3e-70 263.1
Lsi01g00729 . 9 315 C3H Transcription Factor Family AT2G22120 66.8 3.4e-116 415.2
Lsi08g00926 . 33 165 C3H Transcription Factor Family AT5G07040 61.8 9.9e-44 173.3
Lsi06g01347 . 1 403 C3H Transcription Factor Family AT1G18470 71.2 4.8e-170 594.3
Lsi11g00931 . 51 572 C3H Transcription Factor Family AT2G31770 53.1 9.4e-163 570.5
Lsi08g00360 . 17 505 C3H Transcription Factor Family AT2G31770 53.8 2.1e-154 542.7
Lsi11g00931 . 65 557 C3H Transcription Factor Family AT2G31760 54.7 1.2e-162 570.1
Lsi08g00360 . 74 512 C3H Transcription Factor Family AT2G31760 57.8 7.6e-154 540.8
Lsi02g01811 . 43 278 C3H Transcription Factor Family AT5G55970 67.4 1.7e-95 346.3
Lsi01g01995 . 2 324 C3H Transcription Factor Family AT5G63780 55.6 1.4e-96 350.1
Lsi03g01745 . 1 427 C3H Transcription Factor Family AT3G58030 51.9 6.8e-103 371.3
Lsi02g01811 . 36 345 C3H Transcription Factor Family AT4G26580 61.5 2.1e-112 402.5
Lsi01g01637 . 11 446 C3H Transcription Factor Family AT5G01960 66.4 1.4e-148 523.1
Lsi11g01333 . 69 210 C3H Transcription Factor Family AT2G04240 56.5 5.4e-37 151.0
Lsi10g01089 . 1 242 C3H Transcription Factor Family AT5G19430 51.8 1.3e-61 233.4
Lsi07g00769 . 130 585 C3H Transcription Factor Family AT5G45290 52.3 4.2e-102 369.0
Lsi10g01089 . 40 242 C3H Transcription Factor Family AT5G12310 56.4 1.5e-57 219.9
Lsi06g01233 CCT 138 430 C3H Transcription Factor Family AT5G05810 54.1 5.6e-75 278.5
Lsi03g00338 . 53 219 C3H Transcription Factor Family AT5G05830 64.7 3.7e-59 224.9
Lsi03g02162 CCT,ECH 70 231 C3H Transcription Factor Family AT5G05830 61.7 4.2e-55 211.5
Lsi01g01511 CCT,ECH 36 166 C3H Transcription Factor Family AT5G05830 58.8 6.5e-40 161.0
Lsi06g00828 CCT 70 457 C3H Transcription Factor Family AT4G28890 51.6 1.6e-96 350.1
Lsi03g00188 . 81 300 C3H Transcription Factor Family AT5G15790 59.7 7.3e-72 267.3
Lsi03g00367 . 40 311 C3H Transcription Factor Family AT3G55530 79.9 6.3e-115 410.6
Lsi02g02317 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 3.1e-117 418.3
Lsi05g01907 . 10 393 C3H Transcription Factor Family AT2G44580 53.3 1.0e-118 423.7
Lsi08g01421 . 25 150 C3H Transcription Factor Family AT1G74990 59.1 5.7e-40 160.6
Lsi04g01367 . 404 677 C3H Transcription Factor Family AT5G20910 63.9 1.7e-95 346.3
Lsi03g00937 . 119 475 C3H Transcription Factor Family AT1G65040 57.4 3.5e-101 365.2
Lsi01g01051 . 17 227 C3H Transcription Factor Family AT2G23780 61.6 2.2e-73 272.3
Lsi08g01421 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 8.2e-68 253.8
Lsi03g01619 CCT 1 317 C3H Transcription Factor Family AT3G10810 53.9 1.6e-79 293.9
Lsi01g01756 CCT 46 283 C3H Transcription Factor Family AT3G10810 60.7 1.0e-67 254.6
Lsi09g00235 . 1 170 C3H Transcription Factor Family AT1G63840 59.0 5.8e-47 184.1
Lsi09g01587 . 1 152 C3H Transcription Factor Family AT1G63840 50.9 4.1e-40 161.4
Lsi09g00690 . 17 353 C3H Transcription Factor Family AT1G68070 65.1 1.1e-119 426.8
Lsi07g01384 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 1.7e-85 313.2
Lsi04g01830 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.2e-50 195.7
Lsi07g01038 . 54 212 C3H Transcription Factor Family AT1G76410 55.7 8.0e-45 177.2
Lsi07g01038 . 54 203 C3H Transcription Factor Family AT2G17450 56.9 1.1e-38 156.8
Lsi11g00931 . 82 598 C3H Transcription Factor Family AT2G31510 72.6 2.1e-225 778.5
Lsi08g00360 . 86 512 C3H Transcription Factor Family AT2G31510 79.9 7.3e-215 743.4
Lsi01g01180 . 7 169 C3H Transcription Factor Family AT2G35910 61.2 5.5e-53 204.5
Lsi03g01806 . 15 161 C3H Transcription Factor Family AT2G35910 54.2 4.3e-42 168.3
Lsi05g00102 . 61 318 C3H Transcription Factor Family AT2G41980 81.0 8.6e-129 456.8
Lsi05g00103 . 564 821 C3H Transcription Factor Family AT2G41980 80.2 3.3e-128 454.9
Lsi10g00990 . 27 323 C3H Transcription Factor Family AT2G41980 71.9 2.1e-127 452.2
Lsi09g01813 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 1.8e-123 439.1
Lsi09g00815 . 959 1240 C3H Transcription Factor Family AT2G41980 69.9 3.2e-115 411.8
Lsi04g00034 . 106 343 C3H Transcription Factor Family AT2G41980 78.6 9.2e-115 410.2
Lsi01g01940 . 50 236 C3H Transcription Factor Family AT2G41980 85.0 2.4e-94 342.4
Lsi05g01456 . 123 397 C3H Transcription Factor Family AT3G06140 62.7 7.3e-95 344.4
Lsi03g02030 . 33 329 C3H Transcription Factor Family AT3G09770 59.4 1.2e-86 317.0
Lsi05g00445 . 123 613 C3H Transcription Factor Family AT3G26730 52.9 3.5e-144 509.2
Lsi02g00365 . 342 633 C3H Transcription Factor Family AT3G47990 70.2 6.5e-121 430.6
Lsi04g01830 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 3.9e-50 194.9
Lsi07g01038 . 54 235 C3H Transcription Factor Family AT1G20823 51.3 1.5e-46 183.0
Lsi10g00332 . 4 395 C3H Transcription Factor Family AT3G18930 53.8 3.2e-86 315.8
Lsi07g01081 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 4.0e-75 278.1
Lsi03g02071 . 41 310 C3H Transcription Factor Family AT5G02750 53.4 3.0e-67 252.3
Lsi06g01347 . 5 406 C3H Transcription Factor Family AT1G73950 64.4 6.5e-146 514.2
Lsi09g00690 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 1.3e-74 276.6
Lsi07g01384 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 2.7e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000737 5 3 3 3 4 2 4 2 3 2 3 3 5 2 2 5 3 4 5 2 2 3 3 3 3 3 3 4 3 2 94