Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02187 ATGGAGGTTGAGAGAGAAGAAGATGTAAGAGTGGGAGTGAACAGGTTCGAAGAGAGGCAGGCGATCGGGACAGCGGCTCGGAAGGACTACCGAGAGCCGGCCCCAGCACCGCTGTTCGAGGGCGGAGAGTTAGGGTCATGGTCTTTCTACAGGGCTGGGATTGCTGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTATTGACTATAATGGGTGTGGCCAAAGCTCCAAATAAGTGCTCTACTGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACTGCTGGTGGTCACATAAACCCAGCAGTCACATTCGGGCTATTACTGGCAAGGAAGTTGTCGCTTATAAGGGCAGTGTTTTACATTATAATGCAGTGCCTTGGCGCCATCTGTGGCGCCGCGGTTGTCAAAGCCTTCGAAAAAGGACCTTTCGAAAGGCTCGGTGGTGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGGTGCCCTCGGAGCTGAAATCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACTATTCCGATCACCGGAACCGGCATTAATCCAGCAAGAAGCCTCGGCGCCGCCCTTGTTTACAACCGTCACCAAGGCTGGCATGACCATTGGGTGTTCTGGGCAGGGCCGTTGATCGGGGCAGCACTTGCGGCTTTGTACCATCAGACGTTCAACAATGTGGAGATGAAGACTCGAATATCCGATCCGACCTTGGATATTCAGCAATTTCAGCTGTGCTATGTTCAGACAAAGAAGACTAACTCTGGCAAACACTAG 843 51.25 MEVEREEDVRVGVNRFEERQAIGTAARKDYREPAPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVLTIMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGGHINPAVTFGLLLARKLSLIRAVFYIIMQCLGAICGAAVVKAFEKGPFERLGGGANTVNEGYSNTGALGAEIMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAALVYNRHQGWHDHWVFWAGPLIGAALAALYHQTFNNVEMKTRISDPTLDIQQFQLCYVQTKKTNSGKH 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32952177 32954861 - Lsi03G021870.1 Lsi03g02187 659937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02187 280 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02187 280 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02187 280 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02187 280 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02187 280 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02187 280 Pfam Major intrinsic protein 44 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02187 280 PANTHER AQUAPORIN PIP1-4-RELATED 4 179 - -
Lsi03g02187 280 PANTHER AQUAPORIN PIP1-4-RELATED 179 245 - -
Lsi03g02187 280 CDD MIP 51 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g02187 280 Gene3D Glycerol uptake facilitator protein. 36 180 IPR023271 -
Lsi03g02187 280 Gene3D Glycerol uptake facilitator protein. 181 258 IPR023271 -
Lsi03g02187 280 SUPERFAMILY Aquaporin-like 46 250 IPR023271 -
Lsi03g02187 280 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Lsi03g02187 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 179 IPR034294 -
Lsi03g02187 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 179 245 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02187 Lsi-Chr3:32952177 Lsi09g00247 Lsi-Chr9:2583854 2.54E-128 dispersed
Lsi03g02187 Lsi-Chr3:32952177 Lsi04g00959 Lsi-Chr4:10044700 1.19E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02187 K09872 - pop:7466057 375.555