Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02194 ATGACTAATCCAAGCATTCTGATGCGTCTAGCAAGCTTTACCAAATGCAAGTCTATCTTTGGAATGGACAATTTGAAGTTTAATGGCAGAGTATTGAACGATCCACACAAAATCACAAGTTCTTGGAATTATTCTACGCATTTTTGTGACTGGATTGGTGTTACTTGCAATTCCACCATTGGAAGAGTAGTGGTTTTGGAGTTGGAAGCCCAAGATATAACTGGTTCCATACCTCCTTCTTTGGGAAATCTCACTTACCTAACTGAAATCAATTTGGGAGGCAACAAATTTCATGGCTCAATTCCCCAAGAGTTCGGTCGGCTACTGCAATTGCGTCTTCTCAATTTATCTTCCAATAATTTTGGCGGTGATATTCCAGAGAATATAAGCCATTGCACTGAGCTGCTTGTTTTGGACATCACTGACAATGGGCTTATAGGCCAAATTCCAAACCAATTGTTCACATTGACCAAGTTGGAACGACTCAGGTTTGGCATTAACAATTTGACTGGAACCATCCCACCTTGGATGGGAAATTTTTCTTCAATATTGGCTATGTCATTCGCGTGGAACCACTTTCACGGAAGCATTCCTAGTGAAATAGGGCGCCTATCTAGATTGGAACAGTTCACAGTTGCTATAAATAATTTGACAGGTATAGTACCACCTTCCATCTACAACATAACTTCTTTGATTCTCTTGTATTTTACTGAAAATCAATTGCAAGGAACTATACCATCAAATATCGGATTTACTCTTCCCAATCTTCAGACCTTTGCTGGTGGTGTCAATAATTTCACTGGGCTTATTCCAAAGTCTTTGGCTAATGTCTCTGGCCTTCAAGTCTTAGATTTTCCTTATAACAATCTTGTTGGAACGATCTCTGATGACATGGGGAGACTAAAATACTTGGAGCGTCTGAATTTTGGACAAAATAGTCTTGGAGTTGGGAAAGTTGGTGACTTAAATTTTATTAGTTCCTTGGTTAATTGTACTAGTCTAAGAATTTTGGGTCTGGATAATAACCATTTTGGAGGAATACTACCTTCCTCCATTGCCAACCTTTCAGACCAGCTGACAGGGCTAACATTGGGTGGAAATAACTTAACTGGAAACATTCCTCCAGAGATTATAAACTTGATTAACTTGCAAGTTCTTGGACTGGAAGGCAACGTTATGAATGGTGGTATCCCTCCCAATATAGGGAACCTTAAAAACTTGGTGCTTTTGTATTTGGTTGGAAATGAATTAACTGGGCCAATCCCTTCCGCCATTGGTAACTTATCTTCCCTCACCAAGCTTTACTTGAGTAATAACAAACTTGATGGAAGTATACCAACAAGCTTAGGACAATGCAAAAGCCTCCTAAGTCTCCAACTATCTAGTAACAACCTAAGCGGCACCATACCAAAAGAAATCCTCGGTCTTCCTTCCCTTTCAATCACTTTGGCCTTAGATCATAACTCGTTTACTGGTTTATTGCCCGATAAAGTTGGTGGGTTAAGTAGTTTAGTAGAACTAGATGTATCAGAGAATAAATTATCAGGTGATATTCCTAACAACCTTGGTAAATGTGTTAACATGGAACGCTTGTTTCTTGGGGCTAATCAGTTTAAGGGAACAATTCCTCAATCTTTGGAAGCTTTGAAAGGACTTGTAAAATTAAATTTATCAAGCAACAACTTGTCTGGGCCAATTCCCCAATTTCTTGGCAAACTTCTCTCGCTCACGTATGTTGATTTATCCTACAATAACTTTGAGGGAGAAGTGCCCAAAGAAGGAGTTTTTTCCAACTCAACCATGTTTTCTATCCTTGGGAATAGTAATCTGTGCGGTGGTTTACAAGAATTACATTTACCTCCATGCACGTCTAAACAAGCATATTCGTCCAATAAGCAGTTTCTAGCATCAAAGGTGCTAATTCCTGTAACATCTGCAGTTGCCTTCATTGTTATTTTGGTTAGCATCTTTGTTGTGTGTTTTATGCTTAAGAAGATGAGAAAGGATACTTCAACTTCATCTTCTGTAAAGGAGTTTCTACCACAAATTTCTTACTTGGAACTCAATAAATCAACCGACGGATTCTCTGTGGATAATTTGATTGGTTCGGGTAGTTTTGGCTCTGTGTATAAAGGTGTTCTTTCAAATGGTGGATTTATTGTTGCCATCAAAGTTTTAAATCTCCAACAACAAGGTGCTTCTAAGAGTTTTGTTGATGAATGCAATACCCTCTCAAACATTCGGCATCGGAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGATGTCCACGGTAATGAATTTAAAGCTCTAGTCTTCAATTTCATGTCCAATGGAAATCTTGATTGTTGGCTTCATCCCACAAAAGAAGGGGAAAATCAGAGAAGGTTGAGTCTCATCCAGAGATTGAACATTGCTATTGATATTGCATGTGGATTAGACTATCTCCACAATCATTGTGAGCCTCCAATTGTTCATTGTGATCTAAAGCCTAGCAATATATTGCTTGACGAAGATATGGTAGCTCATGTAGGAGACTTCGGGCTAGCTAGATTCATGTTGGAAGCATCAAATGATCAAATATCTTTTAGTCAAACCATGTCACTTGCACTTAAGGGTTCTATCGGATATATCCCTCCAGAGTATGGAACTGGTAGCAGAATTTCGTTCGAAGGAGATATCTTTAGCTATGGAATACTGTTACTAGAGATGATCATCGGAAAAAGACCCACTGACGACACCTTTGGCAATGATGTGGATATTCATTCGTTCACTACAATGACACTACCTCAAGATGCCTTAGGCATAATCGACCCTTCGATACTATTTGAAGAAACACGTCAAGAAGAAGAGAATGAAGACAGAATACAAGTCAAAGCAATAAAGAGTGGAAAAGATCACAGAGAATTCGTTGCAAGAGGGATGGAAGAGTGTTTAGTCTCGATAATAAGAATTGGCTTGGCATGCTCATTGAAAATACCTAGAGAGAGATCGTCAATAAATATTGTCGTTAATGAATTGCAAGCAATTAAAAACTCGTATCTTGAGTTTAAAAAAACACACGAAAGGTTTCGTAAATATTTGTTTCCTCAAGCTTGA 3102 38.52 MTNPSILMRLASFTKCKSIFGMDNLKFNGRVLNDPHKITSSWNYSTHFCDWIGVTCNSTIGRVVVLELEAQDITGSIPPSLGNLTYLTEINLGGNKFHGSIPQEFGRLLQLRLLNLSSNNFGGDIPENISHCTELLVLDITDNGLIGQIPNQLFTLTKLERLRFGINNLTGTIPPWMGNFSSILAMSFAWNHFHGSIPSEIGRLSRLEQFTVAINNLTGIVPPSIYNITSLILLYFTENQLQGTIPSNIGFTLPNLQTFAGGVNNFTGLIPKSLANVSGLQVLDFPYNNLVGTISDDMGRLKYLERLNFGQNSLGVGKVGDLNFISSLVNCTSLRILGLDNNHFGGILPSSIANLSDQLTGLTLGGNNLTGNIPPEIINLINLQVLGLEGNVMNGGIPPNIGNLKNLVLLYLVGNELTGPIPSAIGNLSSLTKLYLSNNKLDGSIPTSLGQCKSLLSLQLSSNNLSGTIPKEILGLPSLSITLALDHNSFTGLLPDKVGGLSSLVELDVSENKLSGDIPNNLGKCVNMERLFLGANQFKGTIPQSLEALKGLVKLNLSSNNLSGPIPQFLGKLLSLTYVDLSYNNFEGEVPKEGVFSNSTMFSILGNSNLCGGLQELHLPPCTSKQAYSSNKQFLASKVLIPVTSAVAFIVILVSIFVVCFMLKKMRKDTSTSSSVKEFLPQISYLELNKSTDGFSVDNLIGSGSFGSVYKGVLSNGGFIVAIKVLNLQQQGASKSFVDECNTLSNIRHRNLLKIITSCSSIDVHGNEFKALVFNFMSNGNLDCWLHPTKEGENQRRLSLIQRLNIAIDIACGLDYLHNHCEPPIVHCDLKPSNILLDEDMVAHVGDFGLARFMLEASNDQISFSQTMSLALKGSIGYIPPEYGTGSRISFEGDIFSYGILLLEMIIGKRPTDDTFGNDVDIHSFTTMTLPQDALGIIDPSILFEETRQEEENEDRIQVKAIKSGKDHREFVARGMEECLVSIIRIGLACSLKIPRERSSINIVVNELQAIKNSYLEFKKTHERFRKYLFPQA 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33014117 33019486 + Lsi03G021940.1 Lsi03g02194 659944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02194 1033 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Lsi03g02194 1033 SUPERFAMILY L domain-like 29 314 - -
Lsi03g02194 1033 SUPERFAMILY L domain-like 358 612 - -
Lsi03g02194 1033 Gene3D Ribonuclease Inhibitor 252 320 IPR032675 -
Lsi03g02194 1033 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 25 1012 - -
Lsi03g02194 1033 Pfam Leucine rich repeat N-terminal domain 32 57 IPR013210 -
Lsi03g02194 1033 SUPERFAMILY Protein kinase-like (PK-like) 670 1004 IPR011009 -
Lsi03g02194 1033 SMART LRR_typ_2 156 180 IPR003591 -
Lsi03g02194 1033 SMART LRR_typ_2 573 598 IPR003591 -
Lsi03g02194 1033 SMART LRR_typ_2 476 500 IPR003591 -
Lsi03g02194 1033 SMART LRR_typ_2 380 404 IPR003591 -
Lsi03g02194 1033 SMART LRR_typ_2 428 452 IPR003591 -
Lsi03g02194 1033 SMART LRR_typ_2 108 132 IPR003591 -
Lsi03g02194 1033 SMART LRR_typ_2 501 525 IPR003591 -
Lsi03g02194 1033 SMART LRR_typ_2 549 572 IPR003591 -
Lsi03g02194 1033 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 25 1012 - -
Lsi03g02194 1033 SMART serkin_6 695 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02194 1033 Gene3D Ribonuclease Inhibitor 138 251 IPR032675 -
Lsi03g02194 1033 Gene3D Phosphorylase Kinase; domain 1 658 776 - -
Lsi03g02194 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Lsi03g02194 1033 Gene3D Ribonuclease Inhibitor 321 626 IPR032675 -
Lsi03g02194 1033 Gene3D Transferase(Phosphotransferase) domain 1 777 1028 - -
Lsi03g02194 1033 ProSiteProfiles Protein kinase domain profile. 695 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02194 1033 Gene3D Ribonuclease Inhibitor 25 135 IPR032675 -
Lsi03g02194 1033 Pfam Protein kinase domain 696 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02194 Lsi-Chr3:33014117 Lsi03g02196 Lsi-Chr3:33029292 0 dispersed
Lsi08g01506 Lsi-Chr8:23170049 Lsi03g02194 Lsi-Chr3:33014117 0 dispersed
Lsi08g01507 Lsi-Chr8:23175604 Lsi03g02194 Lsi-Chr3:33014117 4.41E-09 dispersed
Lsi03g02193 Lsi-Chr3:33009697 Lsi03g02194 Lsi-Chr3:33014117 0 tandem
Lsi03g02194 Lsi-Chr3:33014117 Lsi03g02195 Lsi-Chr3:33022209 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83528 PF00069 Pkinase 6.30E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02194 - - cmo:103486310 1481.85