Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02204 ATGGCTTCTTGTTGCTTTGCAATCCTGAATTGCTGTAAAGGAAATAGCAGCCTCGAGGAACCGGCAGAAGGGATTGCTGTTACCAACAATGTACGTATCTTTTCTTATAATTCACTGAGGTCAGCAACTAGGAATTTTCATCCATCAACCAGAATAGGTGCTGGAGGTTATGGAGTTGTCTACAAAGGAGTTTTAAGGGATGGTACCAATGTTGCAGTCAAATCACTGTCTGCAGAATCAGCTCAGGGAACTCGTGAATTCTTAACCGAGATAAATATGATATCAAATATAAGACATCAAAATCTCGTTGAACTGATTGGTTGTTGTGTCGAAGGCACACATCGAATTTTGGTGTATGAATACCTGGAAAACAACAGCCTTGCGAGTACTTTGCTTGGGTCAGGCGGGTTGTCACGTGAGATTAGTCGAGGTGCGTGTACAATGAGTAAGCATGTCATTCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACAGCTTTGGGTCTTGCATTCCTACACGAGGAAGCTGAATATTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTGATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCAGACAACGTTACTCATGTTAGCACTCGAGTGGCCGGAACTGTTGGATATTTGGCCCCTGAGTATGCACTTTTAGGACAGTTGACAAAGAAGGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAGTAGTTAGTGGAAGTAGCAGCAGTAAAACAGCATTTGGAGAAGAGTTGTCAATTCTCGTGGAATGGACTTGGAAATTAAAACAAGAAGGACGGCTTGTAGAACTAATCGATCCAGAACTGGTCGATTATCCGAAGGCTGAGGTGATGCGTTTCATCACAGTTGCACTCTTCTGTACCCAAGCAGCTGCAAATCAAAGGCCAACCATGAAGCAGGTTGTGGAAATGCTTTCAAGAGAGGTACACCTTAACGAAAAACTATTGACAGAACCAGGAGTATACAAAGGACACAACACTAGGAAGCTAAATGGTGCTGGTACAAGTTCTGAGGGGACTTCATTCTCCCATGGAGACAGAGGTAAAAAAGCTATAAAGTCTACTACATCTTCACCCCAATTTAATAGCTCAAATAGTGTGACTCAAATGCTTCCTAGGTGA 1194 42.38 MASCCFAILNCCKGNSSLEEPAEGIAVTNNVRIFSYNSLRSATRNFHPSTRIGAGGYGVVYKGVLRDGTNVAVKSLSAESAQGTREFLTEINMISNIRHQNLVELIGCCVEGTHRILVYEYLENNSLASTLLGSGGLSREISRGACTMSKHVILDWPKRAKICLGTALGLAFLHEEAEYSVVHRDIKASNILLDRNFDPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEVVSGSSSSKTAFGEELSILVEWTWKLKQEGRLVELIDPELVDYPKAEVMRFITVALFCTQAAANQRPTMKQVVEMLSREVHLNEKLLTEPGVYKGHNTRKLNGAGTSSEGTSFSHGDRGKKAIKSTTSSPQFNSSNSVTQMLPR 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33067216 33071014 - Lsi03G022040.1 Lsi03g02204 659954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02204 397 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 392 - -
Lsi03g02204 397 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 392 - -
Lsi03g02204 397 SUPERFAMILY Protein kinase-like (PK-like) 26 329 IPR011009 -
Lsi03g02204 397 MobiDBLite consensus disorder prediction 376 397 - -
Lsi03g02204 397 Pfam Protein tyrosine and serine/threonine kinase 50 329 IPR001245 GO:0004672|GO:0006468
Lsi03g02204 397 CDD STKc_IRAK 52 331 - -
Lsi03g02204 397 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Lsi03g02204 397 Gene3D Transferase(Phosphotransferase) domain 1 137 342 - -
Lsi03g02204 397 MobiDBLite consensus disorder prediction 346 397 - -
Lsi03g02204 397 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Lsi03g02204 397 ProSiteProfiles Protein kinase domain profile. 46 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02204 397 SMART serkin_6 46 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02204 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00739 Lsi-Chr2:6760443 Lsi03g02204 Lsi-Chr3:33067216 2.67E-116 dispersed
Lsi03g02204 Lsi-Chr3:33067216 Lsi04g01987 Lsi-Chr4:26970268 6.10E-108 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83535 PF07714 PK_Tyr_Ser-Thr 2.30E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02204 - - csv:101218048 694.886