Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02207 ATGGCCACCGCCGCCGCCGCATCCTCCTTCATCGGAACTCGTCTTCCCATTGCCCAATCCGGGTCGGGTCGGGTACAAGCAAGATTTTCATTCGGCAAACAAAAAAGCCCACCAAAGAAATCGTCAAAAAAGCCCATTTCGGACCGGCCGCTGTGGTACCCAGGGGCCGTGGCGCCGGAGTGGCTGGATGGAAGCTTGGTGGGAGATTATGGGTTTGACCCATTTGGGCTGGGCAAACCGGCCGAGTACTTGCAATTTGACCTGGACTCATTGGACCAGAACTTGGCTAAGAATGTGGCTGGTGATGTGATTGGTACTCGGTTCGAGAATGCGGATGTGAAATCCACACCGTTCCAGCCGTACAATGAGGTATTTGGATTGCAGAGGTTTCGTGAGTGCGAACTTATCCATGGAAGGTGGGCTATGTTGGCTACACTTGGTGCCCTCACTGTTGAGTGGCTCACTGGTGTCACTTGGCAAGATGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCAACATTGATATGGATAGAAGTTCTGGTAATTGGGTACATTGAGTTTCAAAGGAATGCTGAGCTTGATCCAGAGAAGAGACTTTACCCTGGAGGCAAATACTTTGATCCCCTTGGCTTAGCGGCCGATCCCGAGAAGAAGGCGACACTTCAATTGGCCGAGATCAAGCACGCTCGCCTCGCCATGGTCGCGTTCCTCGGTTTCGCTGTTCAAGCTGCTGCCACTGGCAAAGGACCCCTCAATAACTGGGCAACCCATCTGAGTGACCCTCTCCACACCACCATTATTGATACAGTCTTCTATTCATCTTGA 858 52.1 MATAAAASSFIGTRLPIAQSGSGRVQARFSFGKQKSPPKKSSKKPISDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYNEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTVFYSS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33090052 33091690 - Lsi03G022070.1 Lsi03g02207 659957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02207 285 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 280 IPR001344 GO:0009765|GO:0016020
Lsi03g02207 285 SUPERFAMILY Chlorophyll a-b binding protein 45 281 - -
Lsi03g02207 285 Gene3D Chlorophyll a/b binding protein domain 52 284 - -
Lsi03g02207 285 Pfam Chlorophyll A-B binding protein 58 254 IPR022796 -
Lsi03g02207 285 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 2 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01533 Lsi-Chr1:13449776 Lsi03g02207 Lsi-Chr3:33090052 4.25E-180 dispersed
Lsi02g01721 Lsi-Chr2:22918251 Lsi03g02207 Lsi-Chr3:33090052 3.38E-49 dispersed
Lsi03g02207 Lsi-Chr3:33090052 Lsi04g00683 Lsi-Chr4:6266236 4.26E-35 dispersed
Lsi03g02207 Lsi-Chr3:33090052 Lsi10g01537 Lsi-Chr10:19772142 2.39E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02207 K08915 - sly:101249002 506.138