Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02209 ATGGCGCCGTTAAGGGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGTTGCAAAAAAAGTCCGATTTGACCCTCGTCTCCAAGGTTCGTTTCGGTTGCCTCAGGCTGTTGCTTGTGAATCTCCAAGAGGGCCTGGTTGGGTTCGTACCGTGCTGTGTGTTGCACAGAACATGGATTTTGAACAAGGAATAACGTCGATCTTGCAAAATGGCGCCGTTAAGGGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGTTGCAAAAAAATTGGTGGGTTGCTAAATGCGACATGTGGCAATGCGACGGAGCTAATTGTAGCAGCTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAATATTCTCTCTTGGGATCCGTACTTTCAAACCTTCTTCTTGTTCTTGGAACCTCACTCTTCTTTGGTGGCATCGTCAATCTTAATAAAGAACAAACCTATGACGGAAGACAAGCTGATGTGAACTCGCACATGCTGTTGTTGGCACTTTTGTGCCATTCTCTACCGATGTTATTCCCTTACGCCGGAGGGTCTGTTGACGTGGCCGGTGTCAGTGTGCTGCGATTGTCTAGAGCCGGTAGTATAATAATGCTGGTGGCCTATGTAGCTTACTTGATCTTTCACCTCTGGAGTCATCGGCGATTTTTTGAAGCAGACAAGGAACAGGACGAATACGACGACGTAGTGGAAGAAAGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGGTGTTGCCCTTCTCATTGCTTTGTTATCTGAGTACGTGGTCGCAACCATCGAGGATGCATCAGAAACTTGGGGTTTATCCGTTGCGTTCCTTAGCATAATCTTGCTACCACTAGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCATTGCATTAGGATCTGCAACTCAAATTGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTATGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCCTCCCTTGCTCTTTCAATATTGGCTTCATCATCCATTTTACAGCCGTCGATTTCAGATTCAGATTTGTACGCTTTGTTCAACGTATTTGCTGCTATTCCCTTTTGGGTCTTTGGTTGGTGGTTACTCTGGCTTTCCTGCCTATCTCCCTGCCTTGTAAGCCATTCAGACTCTGTTCCCTTCAGGACTATGCCGGAAGACAAGAAGCCAGTAATTGTGTGGCGGAATATCGGAAACCTTGAAGCCTCTGATCGTCGAGTCTTCAACACTACGGACTGTGAACCACTATGGAACAGAAACAAGCGATTCGTCACCAGTGGTGGTAGTGGTAGTGATGGCGATGACACTAGCTGCAAATTTGCCTGCATTACTGTTGTGGAAAAGAGAAACCGGAAGGAGTTCCTGCCGACGTCGGCTCAGTTGCTTAAGCATCCATTATCAATTCTGGCTCTGGTGCACAGAGAAGCAACGCTCTTCGCCGCTGGCGCCGTATCGGGGGCGGCCGCGAAGACTGCGACGGCTCCGCTTGAGAGAATCAAGCTTCTTATGCAGACTCATGGAGCAAGAATTGCGCAAGAAGGAGCTAAGAATATTGGTTTTATCGAGGTCGAAGGTGTGGTAAACGTAGATGGAAAGAAATGTATATACGAGATAGGAAGGAAGATGATGGTGGAAAGGTTATACGCATCATACCATATAGTGCTATCCAACTTTTTGCCTATGAAAATTATAAGGGGAGAAGATGGCGAACTTTCTGTGATCGGAAGACTTGCTGCTGGTGCTTGTGCTGGCATGACATCCACCTTCCTGACATACCCATTAGATGTTTTGAGGTTACGCATGGCAGTTGACCCTGGGTTTCGAACGGCATCTGAGATTGCCTTAAGTATGCTACGAGAAGAAGGCATTACATCTTACTACAGTGGTCTTGGACCATCCCTTTTTGGCATAGCTCCTTACATTGCCGTGAACTTTTGCATTTTTGACTTGGTAAAAAAATCTTTGCCAGAGGAAGCTCAAAGGAGAACTGAAACATCTTTATTCACAGCCTTGCTTTCGGCTTCCCTGGCCACACTCATGTGCTATCCTTTGGATACTGTGAGAAGACAGATGCAAATGAAGGGTACACCTTACAAGACAGTTTTCGATGCTTTTGCAGGTATATGGGCTGGTGATGGATTTATTGGATTCTACAGGGGCTTACTACCCAACTTCTTGAAGAATTTACCAAGCAGCAGCATCAAGCTTAGCACATATGATTTTGTCAAGCGTCTTATTGAGACCAGTGAAAATGAGTACCAGAGAATCATCGAGGAAAATCGCGAAAAGCATAACCAAAAGTTCACTGATTAA 2409 45.62 MAPLRARSNGSQHVVVIVAKKVRFDPRLQGSFRLPQAVACESPRGPGWVRTVLCVAQNMDFEQGITSILQNGAVKGTLERLTTCRRHRCKKIGGLLNATCGNATELIVAAFALSKDKIKLVKYSLLGSVLSNLLLVLGTSLFFGGIVNLNKEQTYDGRQADVNSHMLLLALLCHSLPMLFPYAGGSVDVAGVSVLRLSRAGSIIMLVAYVAYLIFHLWSHRRFFEADKEQDEYDDVVEESPVIGKWSAIAWLVGVALLIALLSEYVVATIEDASETWGLSVAFLSIILLPLVGNAAEHAGAVIFAYKNKLDITLGIALGSATQIAMFVVPLCVIVAWVMGMNMDLNFNILETASLALSILASSSILQPSISDSDLYALFNVFAAIPFWVFGWWLLWLSCLSPCLVSHSDSVPFRTMPEDKKPVIVWRNIGNLEASDRRVFNTTDCEPLWNRNKRFVTSGGSGSDGDDTSCKFACITVVEKRNRKEFLPTSAQLLKHPLSILALVHREATLFAAGAVSGAAAKTATAPLERIKLLMQTHGARIAQEGAKNIGFIEVEGVVNVDGKKCIYEIGRKMMVERLYASYHIVLSNFLPMKIIRGEDGELSVIGRLAAGACAGMTSTFLTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFGIAPYIAVNFCIFDLVKKSLPEEAQRRTETSLFTALLSASLATLMCYPLDTVRRQMQMKGTPYKTVFDAFAGIWAGDGFIGFYRGLLPNFLKNLPSSSIKLSTYDFVKRLIETSENEYQRIIEENREKHNQKFTD 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33099706 33124366 - Lsi03G022090.1 Lsi03g02209 659959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02209 802 TIGRFAM cax: calcium/proton exchanger 90 367 IPR004798 GO:0006816|GO:0015369
Lsi03g02209 802 SUPERFAMILY Mitochondrial carrier 509 774 IPR023395 -
Lsi03g02209 802 Pfam Mitochondrial carrier protein 511 552 IPR018108 -
Lsi03g02209 802 Pfam Mitochondrial carrier protein 602 688 IPR018108 -
Lsi03g02209 802 Pfam Mitochondrial carrier protein 698 780 IPR018108 -
Lsi03g02209 802 TIGRFAM caca2: calcium/proton exchanger 90 367 - -
Lsi03g02209 802 Coils Coil 771 798 - -
Lsi03g02209 802 PRINTS Mitochondrial carrier protein signature 702 724 IPR002067 GO:0055085
Lsi03g02209 802 PRINTS Mitochondrial carrier protein signature 659 677 IPR002067 GO:0055085
Lsi03g02209 802 PRINTS Mitochondrial carrier protein signature 618 636 IPR002067 GO:0055085
Lsi03g02209 802 PRINTS Mitochondrial carrier protein signature 523 537 IPR002067 GO:0055085
Lsi03g02209 802 PRINTS Mitochondrial carrier protein signature 510 523 IPR002067 GO:0055085
Lsi03g02209 802 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 91 680 - -
Lsi03g02209 802 Pfam Sodium/calcium exchanger protein 92 217 IPR004837 GO:0016021|GO:0055085
Lsi03g02209 802 Pfam Sodium/calcium exchanger protein 249 363 IPR004837 GO:0016021|GO:0055085
Lsi03g02209 802 ProSiteProfiles Solute carrier (Solcar) repeat profile. 693 777 IPR018108 -
Lsi03g02209 802 Gene3D Mitochondrial carrier domain 505 782 IPR023395 -
Lsi03g02209 802 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 91 680 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lsi03g02209 802 Gene3D - 90 226 IPR044880 -
Lsi03g02209 802 Gene3D - 239 399 IPR044880 -
Lsi03g02209 802 ProSiteProfiles Solute carrier (Solcar) repeat profile. 603 686 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02209 Lsi-Chr3:33099706 Lsi05g02083 Lsi-Chr5:27707662 6.78E-12 dispersed
Lsi02g01286 Lsi-Chr2:17183971 Lsi03g02209 Lsi-Chr3:33099706 8.43E-60 transposed
Lsi07g00460 Lsi-Chr7:4894199 Lsi03g02209 Lsi-Chr3:33099706 7.27E-10 transposed
Lsi07g00632 Lsi-Chr7:6769396 Lsi03g02209 Lsi-Chr3:33099706 1.24E-54 transposed
Lsi07g01450 Lsi-Chr7:21054230 Lsi03g02209 Lsi-Chr3:33099706 1.37E-55 transposed
Lsi10g00028 Lsi-Chr10:461280 Lsi03g02209 Lsi-Chr3:33099706 1.18E-68 transposed
Lsi11g00534 Lsi-Chr11:5615190 Lsi03g02209 Lsi-Chr3:33099706 7.27E-10 transposed
Lsi11g01295 Lsi-Chr11:21591833 Lsi03g02209 Lsi-Chr3:33099706 2.44E-18 transposed
Lsi01g01544 Lsi-Chr1:13564225 Lsi03g02209 Lsi-Chr3:33099706 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02209 K14684 - csv:101213421 580.867