Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02216 ATGCATCTCCTTTCCGCCATGGAAATTCCCTCCACTACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACACCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAGTTTTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCCAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTTTCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACTGAAGCCTGCCAAAGAGAAGCCTAGTGTGGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACAAAGTTGCGAGGAGGATGTCAATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 741 46.02 MHLLSAMEIPSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTELKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEQSCEEDVNEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33171653 33175668 + Lsi03G022160.1 Lsi03g02216 659966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02216 246 ProSiteProfiles Zinc finger PHD-type profile. 190 242 IPR019787 -
Lsi03g02216 246 Pfam PHD-finger 193 241 IPR019787 -
Lsi03g02216 246 CDD PHD_AL_plant 192 242 IPR044104 -
Lsi03g02216 246 SUPERFAMILY FYVE/PHD zinc finger 182 244 IPR011011 -
Lsi03g02216 246 Pfam Alfin 16 141 IPR021998 GO:0006355|GO:0042393
Lsi03g02216 246 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 11 245 - -
Lsi03g02216 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 240 IPR013083 -
Lsi03g02216 246 MobiDBLite consensus disorder prediction 147 181 - -
Lsi03g02216 246 ProSitePatterns Zinc finger PHD-type signature. 193 239 IPR019786 -
Lsi03g02216 246 PANTHER CPG BINDING PROTEIN 11 245 IPR045104 GO:0006355|GO:0042393
Lsi03g02216 246 SMART PHD_3 192 240 IPR001965 -
Lsi03g02216 246 MobiDBLite consensus disorder prediction 152 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02216 - - - csv:101211970 466.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02913 Lsi-Chr2:35346170 Lsi03g02216 Lsi-Chr3:33171653 1.79E-80 dispersed
Lsi03g02216 Lsi-Chr3:33171653 Lsi05g00769 Lsi-Chr5:10818138 1.82E-82 dispersed
Lsi04g00982 Lsi-Chr4:10500418 Lsi03g02216 Lsi-Chr3:33171653 3.72E-61 transposed
Lsi03g02216 Lsi-Chr3:33171653 Lsi04g00981 Lsi-Chr4:10489977 9.04E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00769 . 1 242 Alfin-like Transcription Factor Family AT1G14510 80.2 7.9e-104 373.6
Lsi03g02216 . 14 243 Alfin-like Transcription Factor Family AT1G14510 58.2 5.7e-78 287.7
Lsi02g02913 . 107 311 Alfin-like Transcription Factor Family AT1G14510 66.5 5.3e-76 281.2
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT1G14510 68.6 8.3e-45 177.6
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G26210 71.4 2.6e-86 315.5
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G26210 66.4 1.2e-80 296.6
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT5G26210 58.1 4.0e-79 291.6
Lsi04g00981 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.4e-45 177.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G26210 64.4 1.6e-43 173.3
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G26210 58.3 6.9e-39 157.9
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT3G42790 68.0 1.4e-81 299.7
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT3G42790 58.3 6.7e-79 290.8
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT3G42790 63.8 2.1e-77 285.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT3G42790 67.2 2.6e-43 172.6
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT3G42790 61.2 1.5e-38 156.8
Lsi03g02216 . 7 246 Alfin-like Transcription Factor Family AT5G05610 73.4 9.8e-104 373.2
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G05610 65.9 2.3e-76 282.3
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G05610 59.7 8.7e-76 280.4
Lsi04g00981 . 1 123 Alfin-like Transcription Factor Family AT5G05610 77.2 2.7e-53 205.7
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT5G05610 76.0 4.6e-53 204.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G05610 60.2 1.7e-39 159.8
Lsi11g00171 . 253 397 Alfin-like Transcription Factor Family AT5G05610 51.7 5.5e-38 154.8
Lsi03g02216 . 49 246 Alfin-like Transcription Factor Family AT3G11200 75.2 4.4e-85 311.2
Lsi02g02913 . 104 313 Alfin-like Transcription Factor Family AT3G11200 65.3 2.1e-74 275.8
Lsi05g00769 . 33 244 Alfin-like Transcription Factor Family AT3G11200 63.4 4.5e-69 258.1
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT3G11200 73.2 1.2e-50 196.8
Lsi04g00981 . 43 135 Alfin-like Transcription Factor Family AT3G11200 80.6 6.3e-39 157.9
Lsi05g00769 . 1 150 Alfin-like Transcription Factor Family AT2G02470 80.1 2.4e-68 255.8
Lsi03g02216 . 14 173 Alfin-like Transcription Factor Family AT2G02470 63.6 3.8e-53 205.3
Lsi02g02913 . 107 223 Alfin-like Transcription Factor Family AT2G02470 78.6 8.1e-48 187.6
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT2G02470 69.5 1.9e-44 176.4
Lsi05g00769 . 3 157 Alfin-like Transcription Factor Family AT5G20510 67.9 3.8e-58 221.5
Lsi02g02913 . 107 225 Alfin-like Transcription Factor Family AT5G20510 79.3 5.8e-51 197.6
Lsi03g02216 . 13 163 Alfin-like Transcription Factor Family AT5G20510 61.8 1.0e-50 196.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT5G20510 66.4 1.5e-43 172.9
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G20510 57.9 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25088 PF12165 Alfin 8.40E-67 No_clan Lsi TF