Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g02216 | ATGCATCTCCTTTCCGCCATGGAAATTCCCTCCACTACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACACCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAGTTTTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCCAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTTTCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACTGAAGCCTGCCAAAGAGAAGCCTAGTGTGGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACAAAGTTGCGAGGAGGATGTCAATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG | 741 | 46.02 | MHLLSAMEIPSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTELKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEQSCEEDVNEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 33171653 | 33175668 | + | Lsi03G022160.1 | Lsi03g02216 | 659966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g02216 | 246 | ProSiteProfiles | Zinc finger PHD-type profile. | 190 | 242 | IPR019787 | - | |
| Lsi03g02216 | 246 | Pfam | PHD-finger | 193 | 241 | IPR019787 | - | |
| Lsi03g02216 | 246 | CDD | PHD_AL_plant | 192 | 242 | IPR044104 | - | |
| Lsi03g02216 | 246 | SUPERFAMILY | FYVE/PHD zinc finger | 182 | 244 | IPR011011 | - | |
| Lsi03g02216 | 246 | Pfam | Alfin | 16 | 141 | IPR021998 | GO:0006355|GO:0042393 | |
| Lsi03g02216 | 246 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 11 | 245 | - | - | |
| Lsi03g02216 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 240 | IPR013083 | - | |
| Lsi03g02216 | 246 | MobiDBLite | consensus disorder prediction | 147 | 181 | - | - | |
| Lsi03g02216 | 246 | ProSitePatterns | Zinc finger PHD-type signature. | 193 | 239 | IPR019786 | - | |
| Lsi03g02216 | 246 | PANTHER | CPG BINDING PROTEIN | 11 | 245 | IPR045104 | GO:0006355|GO:0042393 | |
| Lsi03g02216 | 246 | SMART | PHD_3 | 192 | 240 | IPR001965 | - | |
| Lsi03g02216 | 246 | MobiDBLite | consensus disorder prediction | 152 | 175 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02913 | Lsi-Chr2:35346170 | Lsi03g02216 | Lsi-Chr3:33171653 | 1.79E-80 | dispersed | |
| Lsi03g02216 | Lsi-Chr3:33171653 | Lsi05g00769 | Lsi-Chr5:10818138 | 1.82E-82 | dispersed | |
| Lsi04g00982 | Lsi-Chr4:10500418 | Lsi03g02216 | Lsi-Chr3:33171653 | 3.72E-61 | transposed | |
| Lsi03g02216 | Lsi-Chr3:33171653 | Lsi04g00981 | Lsi-Chr4:10489977 | 9.04E-68 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25088 | PF12165 | Alfin | 8.40E-67 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g02216 | - | - | csv:101211970 | 466.463 |