Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g02220 | ATGGAAGGCCATCATCCCCATCCCCATCCCCATCCCCATCCCCATCCCCATCCTCATCCTCATCCCCTTATTCAGCTTCACCAGCAGCAACAGATTCAACATCCTCCTCCGCCGCATCTCCACCAAAGCCTCGCCGTCTCCTCCGATCAAACCGCTGCCGCCTCCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGATGATCAGAGCCGAGCTGGATCAAACCTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACTGCCTCCAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGCAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTTCACAGAATTACAAGCAATTTTTGGAGCAAGAATGCAAAGGATATTATGGGCGGAGGCGGAGAGCGGCGGTAGTGGGTCGAAGAAGAAATCGTTGGCATTATCGTCCGAGGACGATGAAGAAAACGACGATAGCGATGGCGATGGAGGCGAGACGAAAGTTAGCGGTAGGAAGAGGAAAAAGGTCAAAGGAACGGGTGGTACGACGACGACGGGAAGCGGCGAGGGCAGCGGAAAGAGTAATATGAATGATTTGAAAGAAATATTGGAAGATTTTATGAATCAACAAGTACAAATGGAGGTGCAATGGAGGGAAGCATTTGAAGCAAGAGAAAAAGAGAGACAAATGAGGGAAATGGAATGGAAAAGAAACATGGAAGCTTTAGAACATGAAAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAATGGAGGATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA | 939 | 45.47 | MEGHHPHPHPHPHPHPHPHPHPLIQLHQQQQIQHPPPPHLHQSLAVSSDQTAAASADRFPQWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFFTELQAIFGARMQRILWAEAESGGSGSKKKSLALSSEDDEENDDSDGDGGETKVSGRKRKKVKGTGGTTTTGSGEGSGKSNMNDLKEILEDFMNQQVQMEVQWREAFEAREKERQMREMEWKRNMEALEHERIMLERRWREREEQWRMREEVRAEKRDALITALLNKLRRDDHI | 312 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 33225176 | 33226289 | + | Lsi03G022200.1 | Lsi03g02220 | 659970 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g02220 | 312 | MobiDBLite | consensus disorder prediction | 203 | 218 | - | - | |
| Lsi03g02220 | 312 | Pfam | Myb/SANT-like DNA-binding domain | 61 | 145 | IPR044822 | - | |
| Lsi03g02220 | 312 | Gene3D | - | 62 | 123 | - | - | |
| Lsi03g02220 | 312 | CDD | GT1 | 60 | 125 | - | - | |
| Lsi03g02220 | 312 | Coils | Coil | 220 | 240 | - | - | |
| Lsi03g02220 | 312 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Lsi03g02220 | 312 | MobiDBLite | consensus disorder prediction | 24 | 52 | - | - | |
| Lsi03g02220 | 312 | ProSiteProfiles | Myb-like domain profile. | 62 | 118 | IPR001005 | - | |
| Lsi03g02220 | 312 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 44 | 309 | - | - | |
| Lsi03g02220 | 312 | PANTHER | - | 44 | 309 | - | - | |
| Lsi03g02220 | 312 | MobiDBLite | consensus disorder prediction | 161 | 220 | - | - | |
| Lsi03g02220 | 312 | Coils | Coil | 256 | 283 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi01g01550 | Lsi03g02220 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g02220 | Lsi-Chr3:33225176 | Lsi08g00290 | Lsi-Chr8:7501757 | 1.18E-08 | dispersed | |
| Lsi03g01930 | Lsi-Chr3:30716371 | Lsi03g02220 | Lsi-Chr3:33225176 | 1.47E-08 | transposed | |
| Lsi07g00753 | Lsi-Chr7:8241774 | Lsi03g02220 | Lsi-Chr3:33225176 | 5.22E-31 | transposed | |
| Lsi08g01612 | Lsi-Chr8:24067729 | Lsi03g02220 | Lsi-Chr3:33225176 | 8.41E-11 | transposed | |
| Lsi09g00104 | Lsi-Chr9:941739 | Lsi03g02220 | Lsi-Chr3:33225176 | 2.80E-06 | transposed | |
| Lsi10g00706 | Lsi-Chr10:9874458 | Lsi03g02220 | Lsi-Chr3:33225176 | 7.85E-08 | transposed | |
| Lsi01g01550 | Lsi-Chr1:13674463 | Lsi03g02220 | Lsi-Chr3:33225176 | 6.46E-67 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25089 | PF13837 | Myb_DNA-bind_4 | 1.80E-18 | CL0123 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g02220 | - | - | csv:101211490 | 419.083 |