Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g02235 | ATGGACATGGATACCGACGAGAATTCGACAGTCAAAGGAACGGAAGGGCAAGGGAAGCTCATAATGGTAATATTAGTGGGCGCACCTGGAAGCGGCAAATCCACCTTCTGCGAACTTGTAATGGGCTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCGAGTGCACTGAATGATGGAAAGAGTGTATTTGTGGACAGGTGCAATCTTGAAATAGAGCAGCGTGCAGATTTTGTGAAGCTCGGTAGCCCTCAAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCACAGCTCTGTATCTCTCGTTCTGTTAAGCGGACTGGTCATGAAGGGAACTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAGATGCTGCAAAAGAAAGAATTGCCCAAACTAAATGAAGGGTTCACTCGCATAACCTTTTGCCACAATGAGGCCGACGTTCAATCCACTATAGATATGTACAAATCACTTGATTTACATAATATGCTTCCACATGGATGTTTTGGACAGAAGAATCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTGAAGAAAGCAGAAAAACCTTCTGAGACGCGTTCTAGTGCTAATACTGTTAAGGATTCTCCAACTCTGCAAACCCAGGAAAAGAGCGACTCTTGTGATAAAAAGGAAGATCCTGCCTGCACAATGTCGAGAAATGTAGATATGGAGTCGGAGAAAGGTGAAAGTCCAGGCGTTAGATCCTTAGAAGACAATATTTCCCAAAGTGATCCCCCAACTCTTGCATTTCCATCTATTTCAACTTCAGATTTCAAGTTTAGCCATGAAAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAAGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTACTGGTAGACTTGAGTCATGGATCAACGATATTGTCTATGGTTAAAGCTAAAGCAGCTAAGAAAAATATTAGTTCCACCAAGTTTTTTACATTCGTAGGTGATATAACTAAACTCAATTCAGAAGGTGGATTGTGCTGCAATGTTATAGCCAATGCTGCAAACTGGAAGATACTTAATAAAGATATTCCGCACAGGCGACTGAATCCGGGAGGCGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCAACCTGGCAATGTAGTGGCCGTTCCGTTGCCTTCAACTTCTCCGTTGTTCAATAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCCAACATGAATCCACAAAGGCCAAATTATCTCAACCATGACTATGATGAAGGTTGCAAGCTTCTGCGCAATGCTTACTTTTCCCTATTTCAAGCCTTTATTTCAATCGTAGAAGACAAATTTAAGTCGGTTAAGGGAATTCACGAACGCCTCGGCTCGGCACCTTCAGAGCCACAAAAGCATTCTGAGGACAGCCATCACAAGTTTAAGAGAGAGAATTTGCAAAATCTTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGACCCAACTGAAGCATTAAACCAAAACAACAATAAGACTGTCCCCAAAATGAGTAAGCACTGGGGTTCATGGGCACAAGCACTTTACGACACTGCAATGCATCCGGAGCGACATAGTGATACTGTACTGGAGACATCAGATGATGTTGTAGTACTCAATGATATTTATCCAAAGGCACGCAAGCATCTTCTAGTAGTGGCTCGGCGTGAAGGCCTCGACCAACTAGCCGATGTATGTAGAGAACACCTTTCATTGTTGAGGACAATGCACGCTGTGGGTTTGAAGTGGATCGATAAGTTCTTTCATGAAGATGCATTGTTGGTTTTTCGCATCGGATACCACTCGGCTCCATCAATGAGGCAACTGCACCTACATGTTATAAGCCAGGATTTCGACTCCAGTCATCTGAAAAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCAGAGATTCGGTTGCCGTTATGGACGAAGTCAGTAGCCATGGAAAGGCGAGCATCATGGACAATGAGAGCTTGATGTCTATGGAGTTACGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAGCGCATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACACTGCTCGAGGGCGGTCGTTTAGTGATTGCGCCAAGTAATGCTCCTCTATCTTAG | 2271 | 43.81 | MDMDTDENSTVKGTEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLEIEQRADFVKLGSPQVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNEADVQSTIDMYKSLDLHNMLPHGCFGQKNPDKKVQLGIMKFLKKAEKPSETRSSANTVKDSPTLQTQEKSDSCDKKEDPACTMSRNVDMESEKGESPGVRSLEDNISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVLVDLSHGSTILSMVKAKAAKKNISSTKFFTFVGDITKLNSEGGLCCNVIANAANWKILNKDIPHRRLNPGGGGVNAAIFSAAGPGLEVATKQQANSLQPGNVVAVPLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNHDYDEGCKLLRNAYFSLFQAFISIVEDKFKSVKGIHERLGSAPSEPQKHSEDSHHKFKRENLQNLERSKKWKGSQDPTEALNQNNNKTVPKMSKHWGSWAQALYDTAMHPERHSDTVLETSDDVVVLNDIYPKARKHLLVVARREGLDQLADVCREHLSLLRTMHAVGLKWIDKFFHEDALLVFRIGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVAVMDEVSSHGKASIMDNESLMSMELRCNRCRSAHPNLPKLKAHISKCQAPFPSTLLEGGRLVIAPSNAPLS | 756 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 33373290 | 33376940 | - | Lsi03G022350.1 | Lsi03g02235 | 659985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g02235 | 756 | ProSiteProfiles | HIT domain profile. | 559 | 667 | IPR011146 | GO:0003824 | |
Lsi03g02235 | 756 | Gene3D | - | 554 | 735 | IPR036265 | - | |
Lsi03g02235 | 756 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 22 | 166 | IPR027417 | - | |
Lsi03g02235 | 756 | MobiDBLite | consensus disorder prediction | 210 | 278 | - | - | |
Lsi03g02235 | 756 | Pfam | AAA domain | 22 | 144 | - | - | |
Lsi03g02235 | 756 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 260 | 324 | IPR043472 | - | |
Lsi03g02235 | 756 | SUPERFAMILY | HIT-like | 542 | 716 | IPR036265 | - | |
Lsi03g02235 | 756 | MobiDBLite | consensus disorder prediction | 216 | 233 | - | - | |
Lsi03g02235 | 756 | Pfam | C2HE / C2H2 / C2HC zinc-binding finger | 677 | 731 | IPR032566 | - | |
Lsi03g02235 | 756 | Gene3D | - | 5 | 179 | IPR027417 | - | |
Lsi03g02235 | 756 | PANTHER | APRATAXIN-RELATED | 20 | 752 | - | - | |
Lsi03g02235 | 756 | MobiDBLite | consensus disorder prediction | 498 | 530 | - | - | |
Lsi03g02235 | 756 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 325 | 489 | IPR043472 | - | |
Lsi03g02235 | 756 | MobiDBLite | consensus disorder prediction | 234 | 264 | - | - | |
Lsi03g02235 | 756 | ProSitePatterns | HIT domain signature. | 641 | 659 | IPR019808 | - | |
Lsi03g02235 | 756 | PANTHER | APRATAXIN | 20 | 752 | IPR026963 | GO:0003677|GO:0006281|GO:0033699 | |
Lsi03g02235 | 756 | ProSiteProfiles | Macro domain profile. | 332 | 595 | IPR002589 | - | |
Lsi03g02235 | 756 | SUPERFAMILY | Macro domain-like | 326 | 487 | IPR043472 | - | |
Lsi03g02235 | 756 | MobiDBLite | consensus disorder prediction | 494 | 544 | - | - | |
Lsi03g02235 | 756 | Pfam | Scavenger mRNA decapping enzyme C-term binding | 565 | 672 | - | - | |
Lsi03g02235 | 756 | SUPERFAMILY | Macro domain-like | 277 | 316 | IPR043472 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g02235 | K10863 | - | csv:101216867 | 1344.72 |