Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02235 ATGGACATGGATACCGACGAGAATTCGACAGTCAAAGGAACGGAAGGGCAAGGGAAGCTCATAATGGTAATATTAGTGGGCGCACCTGGAAGCGGCAAATCCACCTTCTGCGAACTTGTAATGGGCTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCGAGTGCACTGAATGATGGAAAGAGTGTATTTGTGGACAGGTGCAATCTTGAAATAGAGCAGCGTGCAGATTTTGTGAAGCTCGGTAGCCCTCAAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCACAGCTCTGTATCTCTCGTTCTGTTAAGCGGACTGGTCATGAAGGGAACTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAGATGCTGCAAAAGAAAGAATTGCCCAAACTAAATGAAGGGTTCACTCGCATAACCTTTTGCCACAATGAGGCCGACGTTCAATCCACTATAGATATGTACAAATCACTTGATTTACATAATATGCTTCCACATGGATGTTTTGGACAGAAGAATCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTGAAGAAAGCAGAAAAACCTTCTGAGACGCGTTCTAGTGCTAATACTGTTAAGGATTCTCCAACTCTGCAAACCCAGGAAAAGAGCGACTCTTGTGATAAAAAGGAAGATCCTGCCTGCACAATGTCGAGAAATGTAGATATGGAGTCGGAGAAAGGTGAAAGTCCAGGCGTTAGATCCTTAGAAGACAATATTTCCCAAAGTGATCCCCCAACTCTTGCATTTCCATCTATTTCAACTTCAGATTTCAAGTTTAGCCATGAAAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAAGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTACTGGTAGACTTGAGTCATGGATCAACGATATTGTCTATGGTTAAAGCTAAAGCAGCTAAGAAAAATATTAGTTCCACCAAGTTTTTTACATTCGTAGGTGATATAACTAAACTCAATTCAGAAGGTGGATTGTGCTGCAATGTTATAGCCAATGCTGCAAACTGGAAGATACTTAATAAAGATATTCCGCACAGGCGACTGAATCCGGGAGGCGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCAACCTGGCAATGTAGTGGCCGTTCCGTTGCCTTCAACTTCTCCGTTGTTCAATAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCCAACATGAATCCACAAAGGCCAAATTATCTCAACCATGACTATGATGAAGGTTGCAAGCTTCTGCGCAATGCTTACTTTTCCCTATTTCAAGCCTTTATTTCAATCGTAGAAGACAAATTTAAGTCGGTTAAGGGAATTCACGAACGCCTCGGCTCGGCACCTTCAGAGCCACAAAAGCATTCTGAGGACAGCCATCACAAGTTTAAGAGAGAGAATTTGCAAAATCTTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGACCCAACTGAAGCATTAAACCAAAACAACAATAAGACTGTCCCCAAAATGAGTAAGCACTGGGGTTCATGGGCACAAGCACTTTACGACACTGCAATGCATCCGGAGCGACATAGTGATACTGTACTGGAGACATCAGATGATGTTGTAGTACTCAATGATATTTATCCAAAGGCACGCAAGCATCTTCTAGTAGTGGCTCGGCGTGAAGGCCTCGACCAACTAGCCGATGTATGTAGAGAACACCTTTCATTGTTGAGGACAATGCACGCTGTGGGTTTGAAGTGGATCGATAAGTTCTTTCATGAAGATGCATTGTTGGTTTTTCGCATCGGATACCACTCGGCTCCATCAATGAGGCAACTGCACCTACATGTTATAAGCCAGGATTTCGACTCCAGTCATCTGAAAAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCAGAGATTCGGTTGCCGTTATGGACGAAGTCAGTAGCCATGGAAAGGCGAGCATCATGGACAATGAGAGCTTGATGTCTATGGAGTTACGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAGCGCATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACACTGCTCGAGGGCGGTCGTTTAGTGATTGCGCCAAGTAATGCTCCTCTATCTTAG 2271 43.81 MDMDTDENSTVKGTEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLEIEQRADFVKLGSPQVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNEADVQSTIDMYKSLDLHNMLPHGCFGQKNPDKKVQLGIMKFLKKAEKPSETRSSANTVKDSPTLQTQEKSDSCDKKEDPACTMSRNVDMESEKGESPGVRSLEDNISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVLVDLSHGSTILSMVKAKAAKKNISSTKFFTFVGDITKLNSEGGLCCNVIANAANWKILNKDIPHRRLNPGGGGVNAAIFSAAGPGLEVATKQQANSLQPGNVVAVPLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNHDYDEGCKLLRNAYFSLFQAFISIVEDKFKSVKGIHERLGSAPSEPQKHSEDSHHKFKRENLQNLERSKKWKGSQDPTEALNQNNNKTVPKMSKHWGSWAQALYDTAMHPERHSDTVLETSDDVVVLNDIYPKARKHLLVVARREGLDQLADVCREHLSLLRTMHAVGLKWIDKFFHEDALLVFRIGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVAVMDEVSSHGKASIMDNESLMSMELRCNRCRSAHPNLPKLKAHISKCQAPFPSTLLEGGRLVIAPSNAPLS 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33373290 33376940 - Lsi03G022350.1 Lsi03g02235 659985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02235 756 ProSiteProfiles HIT domain profile. 559 667 IPR011146 GO:0003824
Lsi03g02235 756 Gene3D - 554 735 IPR036265 -
Lsi03g02235 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 166 IPR027417 -
Lsi03g02235 756 MobiDBLite consensus disorder prediction 210 278 - -
Lsi03g02235 756 Pfam AAA domain 22 144 - -
Lsi03g02235 756 Gene3D Leucine Aminopeptidase, subunit E, domain 1 260 324 IPR043472 -
Lsi03g02235 756 SUPERFAMILY HIT-like 542 716 IPR036265 -
Lsi03g02235 756 MobiDBLite consensus disorder prediction 216 233 - -
Lsi03g02235 756 Pfam C2HE / C2H2 / C2HC zinc-binding finger 677 731 IPR032566 -
Lsi03g02235 756 Gene3D - 5 179 IPR027417 -
Lsi03g02235 756 PANTHER APRATAXIN-RELATED 20 752 - -
Lsi03g02235 756 MobiDBLite consensus disorder prediction 498 530 - -
Lsi03g02235 756 Gene3D Leucine Aminopeptidase, subunit E, domain 1 325 489 IPR043472 -
Lsi03g02235 756 MobiDBLite consensus disorder prediction 234 264 - -
Lsi03g02235 756 ProSitePatterns HIT domain signature. 641 659 IPR019808 -
Lsi03g02235 756 PANTHER APRATAXIN 20 752 IPR026963 GO:0003677|GO:0006281|GO:0033699
Lsi03g02235 756 ProSiteProfiles Macro domain profile. 332 595 IPR002589 -
Lsi03g02235 756 SUPERFAMILY Macro domain-like 326 487 IPR043472 -
Lsi03g02235 756 MobiDBLite consensus disorder prediction 494 544 - -
Lsi03g02235 756 Pfam Scavenger mRNA decapping enzyme C-term binding 565 672 - -
Lsi03g02235 756 SUPERFAMILY Macro domain-like 277 316 IPR043472 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02235 K10863 - csv:101216867 1344.72