Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02239 ATGAACAACACCCCGCCGGGAAACATGGGCGCCGGAACCCCACCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGGCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTCAATTCTGCGTTTATGGCACTTTACGCCTTCGCGGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACCGAATGGCGTTTGGAGATCAGTTGATTCCTTTATGGGGAAAAGGAATTCCAGCTCTGTCTCAAAGTTACTTAATAAACCAAGCCAATATCCCTGAGAGTGGCTACACAAACAACAATGGAAGGGTAACGCCAAGAATTCAACCCAATATTCCCATGGCTTCACTTGTGTATTTCCAATTTACTTTTGCTGCGATTACTGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCCTGGATGGCTTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGAGCATACAGTGTTTGGGGCGGAGGGTTTCTGTTTAAATGGGGAGTAATTGATTACTCCGGCGGCTATGTGATCCATCTTTCCTCTGGAATTGCTGGTTTAACAGCGGCTTATTGGGTTGGGCCGAGGATAAAGAGTGACAGAGAGAGGTTTCCGCCGAATAACGTGCTGCTGATGTTGGCCGGAGCGGGGCTGTTGTGGATGGGATGGTCGGGATTTAACGGCGGAGCGCCGCACTCGGCAAACGTGGTGGCGTCGATAGCGGTGCTGAATACGAACGTGAGTGCGGCGACGAGCCTGTTGGTTTGGACAATTTTGGATGTGTTTTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACCCCTGGCGCTGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAGTTCTAGCAGGGAGTATTCCATGGCTATCCATGATGGTTCTTCATAAAAAATTGAGCTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTGGCGGGATTGATGGGCGGGCTTTTAACTGGGCTTTTAGCGGAGCCCACTCTATGCGATTTATACCTACCAGTTACCGGCACACGTGGCGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTCCTGAAACAACTGGCTGGATCCACCTTCATCATAGGATGGAACATCGTGTCAACCACCATAATACTCCTCTTTATTCGGCTGTTTATGCCGTTAAGAATGCCCGACGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAAGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCTAGAAGGCACGGCAATGCGGCGGCCAATGTGGAAGAAGGAACCGGCTCGCCTTATATCAATGGTGCTCGAGGAGTAATCATCGAGTTGTGA 1461 50.79 MNNTPPGNMGAGTPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPLWGKGIPALSQSYLINQANIPESGYTNNNGRVTPRIQPNIPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFKWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSIPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPVTGTRGAFYGKNGGVQFLKQLAGSTFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANVEEGTGSPYINGARGVIIEL 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33399862 33404251 - Lsi03G022390.1 Lsi03g02239 659989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02239 486 ProSitePatterns Ammonium transporters signature. 191 216 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi03g02239 486 Pfam Ammonium Transporter Family 24 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi03g02239 486 SUPERFAMILY Ammonium transporter 16 428 - -
Lsi03g02239 486 TIGRFAM amt: ammonium transporter 21 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi03g02239 486 PRINTS Rhesus blood group protein signature 354 370 IPR002229 GO:0005887
Lsi03g02239 486 PRINTS Rhesus blood group protein signature 135 151 IPR002229 GO:0005887
Lsi03g02239 486 PRINTS Rhesus blood group protein signature 316 334 IPR002229 GO:0005887
Lsi03g02239 486 PRINTS Rhesus blood group protein signature 230 248 IPR002229 GO:0005887
Lsi03g02239 486 PRINTS Rhesus blood group protein signature 261 283 IPR002229 GO:0005887
Lsi03g02239 486 PANTHER AMMONIUM TRANSPORTER MEP2 11 483 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi03g02239 486 Gene3D Ammonium transporter AmtB like domains 6 449 IPR029020 -
Lsi03g02239 486 PANTHER AMMONIUM TRANSPORTER 2 11 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02239 Lsi-Chr3:33399862 Lsi08g01170 Lsi-Chr8:20318908 0 dispersed
Lsi03g02239 Lsi-Chr3:33399862 Lsi09g01170 Lsi-Chr9:18944306 3.48E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02239 K03320 - csv:101207321 913.679