Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02240 ATGGCTATGGCAGCTCCTCTGGCTCTTCTTTTTTTGTTCTTCTTTTTGGCTGCTCATTCCGTACAGTCTTCATTTACCTACCATGGATTCAACGATACAGGACTAGATCTTGAGGGAGCTTTTGTATTGAAGCCATCTGGTGCGTTGAGGCTCACCAATAGATCGCATAATGTTATCGGCCACGCATTCTATCCGACTTCATTCCAGATGTTTAATAGAAGTTCTGACTCGTTTCCGAATGTTTCATCCTTCAGCACAACTTTTGTTTTTGCAATTGATCCTTCGAGCCCCGGCCAAGGTGGGTACGGCTTGGCCTTTGCCATAGCTCCATCAACCCAATTTGCAGGTGCAGAGAGTGGACACTTTCTTGGATTGTTCAACTCTTTCAACAATGGTAATACTTCAAACCATATATTTGCTGTTGAATTTGACACTGTAAATGGGCATGATGAAGAAAGGAACACCAAAGGAAATCATATTGGGATCAACATCAATGGCGTTTCATCAGTTGCATCCAAACCTGCTTCTTATTCTGACTATGGCGAAGCTCATGAACACGACTTGCAAATGGATTCTGGTGATCCTATCATCGCTTGGATTGAATATGATGGCCCCGGTGGAATAGTGAACGTCACAATAGCTCCCTGGAAGCAGCAAAAAAAACCAACAAAGCCACTCCTTTCCCGTCCGATTGACCTGAAACCTGTTGTAAAGGAACAAATGTTCGTCGGCTTCTCGGCTTCGACTGGAGATAAAACAAGCTCTCATTACATCTTGGGATGGAGTTTTGCAGTGAATGGACCAGCGCCTCCCCTGAATTACCCTCTTCTTCCCAACCCACCAAAAGAGCAAGATTCTCTTTCTTCACCACCCAACTCCCACTTCAAGGTTTTTATAGCAGTTATTTCTGTTGTAGCCATTCTAGGAATTCTTTTCTTAGCTTTCTGGTATAGAAAAACGTGGCGAACTGAGAGGCTTGAGGATTGGGAAAGAGACTGTCCTCACAGATTCCACTACAGAGACCTTTACACAGCAACAAAAGGATTTAAAAGTAGCGAGCTAATTGGAATTGGGGGGTTTGGCTCAGTGTATAAAGGTCAGATACGTTCAACTGGAATTGAGATTGCAGTGAAGAGAGTAAGAAGAAACTCAGGCCAAGGAATGAAAGAATTCGCAGCAGAAATCGAAAGCTTAGGTCGATTAAGACACAAGAACTTGGTGAATCTCCAAGGGTGGTGCAAGAAAAAGAACGATCTACTCATAGTTTACGATTATATTCCAAATGGTTGCCTCTATTCTCTTCTATATCATCCAAAAAACAACTATATATTGAATTGGAAACAAAGATTCAACATCCTCAAAGGAATTGCAGCAGGATTATTATACCTTCACGAAGAGTGGGAGCAAGTAGTGATCCACCGAGATGTGAAGCCAAGTAATGTTCTAATAGACGCCGACATGAATCCTCGATTGAGCGATTTCGGTCTAGCCAGGCAATACGACCACGACGAAGCATCGCACACGACCGGCGTCGTCGGCACGATCGGCTACATAGCGCCGGAGTTGGTTCGTACAGGGAAGGCTTCGAAAAGCACGGATGTGTTTGGATATGGAGTTCTGCTTCTGGAAGTGGCGTGTGGAAGAAAACCTCTGGAATCGGAACAGTTCATATTGGTGGATTGGGTGATGGAGCGGTATGAAAGCGGAAGAATTCTTGATGCGGCTGATCCGAAGTTGAATTCGGTTTATGAGGGTGAGGAGATGGAGATGGTTCTGCAATTAGGGCTTCTTTGTACTCACCAGAGAGCCGAAGCTCGGCCGACGATGAGACAGGTAACGAGAATCCTTCACGGCGACGATCAACTTCCGGCGGTGGACGGGTGGGCTTGTTCAAAAAGTTACTCCAGATTTAACTCAAGAATGACTGAAGTGATTTCAGCAACGTCTTATCGTTCATTGTCCATTGGCGATATTTCTTCTGGTTCCATAGATGCAGGCCGATAG 2004 44.71 MAMAAPLALLFLFFFLAAHSVQSSFTYHGFNDTGLDLEGAFVLKPSGALRLTNRSHNVIGHAFYPTSFQMFNRSSDSFPNVSSFSTTFVFAIDPSSPGQGGYGLAFAIAPSTQFAGAESGHFLGLFNSFNNGNTSNHIFAVEFDTVNGHDEERNTKGNHIGININGVSSVASKPASYSDYGEAHEHDLQMDSGDPIIAWIEYDGPGGIVNVTIAPWKQQKKPTKPLLSRPIDLKPVVKEQMFVGFSASTGDKTSSHYILGWSFAVNGPAPPLNYPLLPNPPKEQDSLSSPPNSHFKVFIAVISVVAILGILFLAFWYRKTWRTERLEDWERDCPHRFHYRDLYTATKGFKSSELIGIGGFGSVYKGQIRSTGIEIAVKRVRRNSGQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLIVYDYIPNGCLYSLLYHPKNNYILNWKQRFNILKGIAAGLLYLHEEWEQVVIHRDVKPSNVLIDADMNPRLSDFGLARQYDHDEASHTTGVVGTIGYIAPELVRTGKASKSTDVFGYGVLLLEVACGRKPLESEQFILVDWVMERYESGRILDAADPKLNSVYEGEEMEMVLQLGLLCTHQRAEARPTMRQVTRILHGDDQLPAVDGWACSKSYSRFNSRMTEVISATSYRSLSIGDISSGSIDAGR 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33409266 33411269 - Lsi03G022400.1 Lsi03g02240 659990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02240 667 CDD lectin_legume_LecRK_Arcelin_ConA 24 267 IPR001220 GO:0030246
Lsi03g02240 667 Pfam Legume lectin domain 23 274 IPR001220 GO:0030246
Lsi03g02240 667 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Lsi03g02240 667 CDD STKc_IRAK 355 616 - -
Lsi03g02240 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 282 IPR013320 -
Lsi03g02240 667 SUPERFAMILY Protein kinase-like (PK-like) 333 622 IPR011009 -
Lsi03g02240 667 PANTHER - 9 663 - -
Lsi03g02240 667 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02240 667 Pfam Protein kinase domain 350 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02240 667 SMART serkin_6 349 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02240 667 Gene3D Transferase(Phosphotransferase) domain 1 426 634 - -
Lsi03g02240 667 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 9 663 - -
Lsi03g02240 667 Gene3D - 21 269 - -
Lsi03g02240 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Lsi03g02240 667 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02240 Lsi-Chr3:33409266 Lsi08g00117 Lsi-Chr8:2544376 0 dispersed
Lsi03g02240 Lsi-Chr3:33409266 Lsi03g02241 Lsi-Chr3:33415119 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83537 PF00069 Pkinase 2.70E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02240 - - csv:101216394 1097.8