Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02241 ATGGGAGTTTCTTTAGCTTGCCTTGTGATGTTTTTTTTCTGTGTCGCTGCTCTTTCTGTCCAAGCTTCATTTGTCTACCATGGATTCAATAATTCAAATCTGGTCCTTAGTCAAGGAGCTTTTATAGAGCCTTCTGGCTTGTTAAGGCTAACCAACAGCTCCCAGTACGTTATAGGCCATGCTTTCTATCCTGATTCCCACCAGATGTTTGATAATAGTTCTGAACCAGTTTTAGAAGTTTCTTCTTTCAGCACAACTTTTGTGTTTGCAATAGTTCCATCAAGCTCTGGTCCACCAGTTGGGCATGGCCTCGCCTTTGTTATAGCTCCATCAACCCAATTTCCAGGTGCTGGAAGTGAACATTTCTTGGGATTATTCAATGCCTCCAACGATGGCGACCCTTCAAATCATATCTTTGCAGTTGAATTCGATACTGTCAATGGCCACGATGACCCTACAAATTCGAAAGGCAACCATGTTGGAATCAACAAGAATGGTGTGCTTTCAAATGCGTCTGAATCAGCTGAGTATTCTAACTATGGCTCTGAGGTGAAGAAGGAGGTGTATTTGGATAGTGGTGATCCAATCCAAGCTTGGATTGAGTATGATCGCCATAGTAATTTACTGAATGTCACAATAGCTCCCGCAAATGTAAACAGACCAACTGAGCCATTGATTTCACATCCCATTAACTGGAATTCAGTTTTGATTGAGAACATGTATGTTGGCTTCTCTGCATCAACTGGAAAAGAAACAAGCTTCCACTACATTTCAGGTTGGAGTTTTGCAATCAACGAATCAGCACCTGAGTTAAATGTTTCTCGACTTCCAAGACCACCGAAAGTGGAAATTCCTCTGCCTTTATCGTCAACATTCAATCCTCTAGTCACTGTTCTTATACCAATATTATCTGCCATAACACTTATGGGAATTTTGTTCTTAGCCTCCATATTCAGAAGAAGATTTCGAGGTGAAAACCTTGAAGAATGGGAAAGAGATTGTCCTCACAGATTTGGTTATAGAGATCTTTATAAAGCAACAAAGGGATTTAAAGACTCCGAGCTCGTTGGATCAGGAGGCTTTGGCTCAGTATACAGAGGTGTCTTACCTACCACTGGAAGTGAAATTGCTGTAAAGAAGGTAACAAGAAATTCGAGTCAGGGAATGAAGGAATTCGCTGCAGAGATCGAAAGTTTGGGCCGACTAAGACACAAGAACTTGGTAAATCTCCAAGGATGGTGCAAGAAAAAGAATGATCTCCTCTTGGTTTATGACTATGTTCCAAATGGAAGCTTGGATTCTCTCCTCTACCATCCAAAAGACAACTTTGTACTGAATTGGGAACAAAGAATCAACATCCTCAAAGGCGTTGCTGGTGGATTGTTATACCTACATGAAGAATGGGAGCGAGTAGTGATCCATCGAGATATTAAGCCAAGTAATGTATTGATAGATATTGGCATGAATGCTCGACTAAGTGACTTCGGTCTCGCAAGGTTATACGACCACGACCAAATATCACATACAACCAGCGTCGTTGGCACAATTGGCTACATCTCACCCGAGTTGGCTCGCACCGGAAAAGCATCAAAAACTACAGATGTGTTTGCCTATGGAGTTTTAATCCTTGAAGTGGCTTGTGGAAGAAGACCTCTAGAATCAGATATATTCATATTGGTAGATTGGGTAATGGAATGCCATGAAAGAGGTCGAATTCTTGATGCAGCCGATCCAAAATTGAATGCTGTTTATGATATGGTTGAGATGGAGATGGTTTTGCAACTTGGCCTTCTTTGTTCCCATTATAAGCCTGAAGCTAGGCCAACCATGAGGCAAGTCACGAGATTTCTTAATGGAGAAGACCAAATTCTTTCTTTTGATCCTTCACCTTATTCTCAACTTACCTTCCAATCTAACTCGGGTTTCACTCAATTTATTCCACCTTCTTCGCGTACTTCAACCACTAGTTTTGTCTCTTCAACTTCAATAGGTCTAGGTAGGTAA 2004 41.27 MGVSLACLVMFFFCVAALSVQASFVYHGFNNSNLVLSQGAFIEPSGLLRLTNSSQYVIGHAFYPDSHQMFDNSSEPVLEVSSFSTTFVFAIVPSSSGPPVGHGLAFVIAPSTQFPGAGSEHFLGLFNASNDGDPSNHIFAVEFDTVNGHDDPTNSKGNHVGINKNGVLSNASESAEYSNYGSEVKKEVYLDSGDPIQAWIEYDRHSNLLNVTIAPANVNRPTEPLISHPINWNSVLIENMYVGFSASTGKETSFHYISGWSFAINESAPELNVSRLPRPPKVEIPLPLSSTFNPLVTVLIPILSAITLMGILFLASIFRRRFRGENLEEWERDCPHRFGYRDLYKATKGFKDSELVGSGGFGSVYRGVLPTTGSEIAVKKVTRNSSQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDYVPNGSLDSLLYHPKDNFVLNWEQRINILKGVAGGLLYLHEEWERVVIHRDIKPSNVLIDIGMNARLSDFGLARLYDHDQISHTTSVVGTIGYISPELARTGKASKTTDVFAYGVLILEVACGRRPLESDIFILVDWVMECHERGRILDAADPKLNAVYDMVEMEMVLQLGLLCSHYKPEARPTMRQVTRFLNGEDQILSFDPSPYSQLTFQSNSGFTQFIPPSSRTSTTSFVSSTSIGLGR 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33415119 33417122 - Lsi03G022410.1 Lsi03g02241 659991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02241 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 281 IPR013320 -
Lsi03g02241 667 CDD STKc_IRAK 356 619 - -
Lsi03g02241 667 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 7 649 - -
Lsi03g02241 667 SUPERFAMILY Protein kinase-like (PK-like) 334 656 IPR011009 -
Lsi03g02241 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Lsi03g02241 667 Gene3D Phosphorylase Kinase; domain 1 335 426 - -
Lsi03g02241 667 ProSiteProfiles Protein kinase domain profile. 350 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02241 667 ProSitePatterns Protein kinases ATP-binding region signature. 356 380 IPR017441 GO:0005524
Lsi03g02241 667 Gene3D Transferase(Phosphotransferase) domain 1 427 626 - -
Lsi03g02241 667 Gene3D - 20 275 - -
Lsi03g02241 667 PANTHER - 7 649 - -
Lsi03g02241 667 Pfam Legume lectin domain 22 276 IPR001220 GO:0030246
Lsi03g02241 667 Pfam Protein kinase domain 351 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02241 667 CDD lectin_legume_LecRK_Arcelin_ConA 23 265 IPR001220 GO:0030246
Lsi03g02241 667 SMART serkin_6 350 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02130 Lsi-Chr3:32463610 Lsi03g02241 Lsi-Chr3:33415119 0 dispersed
Lsi03g02241 Lsi-Chr3:33415119 Lsi08g00117 Lsi-Chr8:2544376 0 dispersed
Lsi09g01148 Lsi-Chr9:18426235 Lsi03g02241 Lsi-Chr3:33415119 7.95E-64 dispersed
Lsi03g02240 Lsi-Chr3:33409266 Lsi03g02241 Lsi-Chr3:33415119 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83538 PF00069 Pkinase 4.40E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02241 - - csv:101216151 1138.64