Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02248 ATGGGAAAAAGCCATAACCCTCTGAGTGAATCTCAGGTACACCCACTTCAGTTCATGCAGATTCTTGCACCAAAAACAGCTGATTGGTGCTCTAAATCACCAAATAAGAACAGAAAATTCAAGAACCAACAATGGAGAAGCTGTTCTTCATACCTCATCGCTCTCCTTTTGGCTCATCTTTTGGCTTGTTCCTTTCGACCAGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAACATGAACTCATCGATCTAAAAGGAGCTTTGCATAGCTGGAACGGCAGTAATGGAGCTTGTTCCGGGCAGTGGGCAGGAATCAAGTGCGTGAAGGGGCAGGTTATTGCTATACAGCTTCCATGGAAGGCTCTTGCCGGCCGGATTTCCGACAGGATTGGGCAGCTCCGGGAACTTCGGAAGCTCAGCCTCCACGACAATGTGATCTCCGGCGCGGTCCCTCGGTCCCTCGGGTTCCTTCCAAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTAACAGGTTCTATTCCTCCAACAATTGGTAATCTTCCTCTTCTTCAAACTCTTGATTTGAGCAACAATTTGCTCACTGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGATTAGAGTTAATCTGAGTTACAATTCATTGTCTGGATCTATCCCAAGTAGTTTTACGCAGTCGTTTTCTCTTATAATTCTTGCCCTTCAGCACAATAATATTTCTGGGACCGTCCCAGATTCTTGGGGAGGTCTCGGAAACAGAACTTGCCCACTTGGGGTTTTAGCACTTGATCATAATGCTATATCTGGAGCCATTCCAGCTTCTCTGAGTAAATTGGAATGGCTTCAAGAGATTTCTATCAGTGAAAATAAGATCTCTGGGGCCATACCAAGTGAGATAGGCAGGCTGAAGAGACTTCGTCTTTTGGATTTGTCCAACAACGCCATTAATGGTGGCTTCCCTTCGAGTTTCTCCAATCTCTCCTCTCTTGAGCTATTGAATGTTGAAAATAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTGAAGAACCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAGATTCCTGCAAGTTTTGGGAACATTTCTGGTATTGACCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTACTGAATCTAACTTCTTTCAATGTCTCTTACAACAATCTCTCTGGCCCTGTTCCAGTTCTCCTGTCAAATAAGTTCAATGCGAGCTCTTTTGTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCTGCATCCTCCCCACATAATATTACGACCCCATCAACTGAGGTCCTGAAACCGCATCGCCGCCGCAGACTTAGTGTAAAGGACATAATCCTGATAGCTGCTGGAGCGCTGTTGCTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAGAAAGAATGACAAAACAGCTGCCAAGCAAACTGCTGCAAGAAGCATCGAGAAGGCAGCACCGGGCAGCACCGAAGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGATCTTCTGTGTGCGACTGCGGAGATCATGGGCAAGAGCACATATGGAACAGCATATAAAGCTACATTAGAAGATGGAAATGAAGTTGCAGTGAAAAGATTGAGGGAAAAAACAACAAAAGGGCAGAAGGAATTTGAAACCGAAGTTGCAGGACTCGGAAAAATTCGACATCCAAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAGGGAGAGAAGCTCCTTGTCTTTGATTACATGCCTAGAGGAAGCCTCTCTTCCTTCCTTCATGCTCGCGGGCCGGAAACCACAGTCGATTGGCCAACGAGGATGAAAATAGCGATCGGAGTCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGTTGGATGATCAGACCAATGCTAGTATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCTACTGCAGGAACACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAAGCCACAACAAAGACAGATGTTTACAGCCTTGGAGTCATAATCTTGGAACTTTTGACTGGAAAATCTCCTGGAGAAGCCATGGACGGAATGGATTTACCTCAGTGGGTGGCCTCAATAGTAAAGGAAGAGTGGACCAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACACAAAATATTGGTGATGATCTGCTGAACACGTTAAAACTAGCCCTGCATTGTGTTGATCCATCACCGACTGCTCGGCCAGATGTTCAGCTAATACTCCAACAACTGGAGGAAATTAATGCTTCCACTTCCGGTGACGACGGAGCCAAAAACCAACCAGCAAATGAATAG 2574 44.79 MGKSHNPLSESQVHPLQFMQILAPKTADWCSKSPNKNRKFKNQQWRSCSSYLIALLLAHLLACSFRPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNVISGAVPRSLGFLPNLRGVYLFNNRLTGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLIRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGLGNRTCPLGVLALDHNAISGAIPASLSKLEWLQEISISENKISGAIPSEIGRLKRLRLLDLSNNAINGGFPSSFSNLSSLELLNVENNRLESQIPGDIDRLKNLSVVKLGKNRFSGEIPASFGNISGIDQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFVGNLQLCGFSTSTPCLPASSPHNITTPSTEVLKPHRRRRLSVKDIILIAAGALLLLLLLLCSILLCCLLSKRAAARKNDKTAAKQTAARSIEKAAPGSTEVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGVTQGLNYLHTEENLIHGNLTSSNILLDDQTNASIADFGLPKLMTSAAATNVIATAGTQGYNAPELTKTKKATTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDDLLNTLKLALHCVDPSPTARPDVQLILQQLEEINASTSGDDGAKNQPANE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33456316 33459426 - Lsi03G022480.1 Lsi03g02248 659998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02248 857 Pfam Leucine rich repeat 274 330 IPR001611 GO:0005515
Lsi03g02248 857 CDD STKc_IRAK 575 840 - -
Lsi03g02248 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
Lsi03g02248 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 37 845 - -
Lsi03g02248 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Lsi03g02248 857 SUPERFAMILY L domain-like 106 450 - -
Lsi03g02248 857 Gene3D Transferase(Phosphotransferase) domain 1 647 854 - -
Lsi03g02248 857 Gene3D Ribonuclease Inhibitor 79 272 IPR032675 -
Lsi03g02248 857 Pfam Leucine Rich repeats (2 copies) 170 210 IPR025875 -
Lsi03g02248 857 SMART LRR_typ_2 341 365 IPR003591 -
Lsi03g02248 857 SMART LRR_typ_2 413 436 IPR003591 -
Lsi03g02248 857 SMART LRR_typ_2 145 168 IPR003591 -
Lsi03g02248 857 SMART LRR_typ_2 317 340 IPR003591 -
Lsi03g02248 857 SMART LRR_typ_2 169 192 IPR003591 -
Lsi03g02248 857 SMART LRR_typ_2 193 217 IPR003591 -
Lsi03g02248 857 Gene3D Ribonuclease Inhibitor 273 462 IPR032675 -
Lsi03g02248 857 PRINTS Leucine-rich repeat signature 196 209 - -
Lsi03g02248 857 PRINTS Leucine-rich repeat signature 317 330 - -
Lsi03g02248 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672|GO:0006468
Lsi03g02248 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02248 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 37 845 - -
Lsi03g02248 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01583 Lsi03g02248 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02066 Lsi-Chr2:26822626 Lsi03g02248 Lsi-Chr3:33456316 2.93E-17 dispersed
Lsi03g02248 Lsi-Chr3:33456316 Lsi04g01054 Lsi-Chr4:12428994 0 dispersed
Lsi03g02248 Lsi-Chr3:33456316 Lsi01g00619 Lsi-Chr1:4972022 1.02E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83539 PF07714 PK_Tyr_Ser-Thr 2.20E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02248 - - bhj:120090401 1516.13