Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02255 ATGAATAACATAAACCAAACGATAAATACACTCGCTAGCGGATCTTCTGACAACAGAACCAATAATTTCGGTATGGAAGTTGCGAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTTTACTTTTCTCCTTTGGTGTTTTTCCTTCTCCTACTACTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGATCAGCAAGAAATGAAGGCAGATGTGAAAAATAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACATGACTCCACTGAATCCGAGCGGTTTGTCATGTGATGAAAGTGGAACGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCCAAGCCAATTTCTCAGCTATCAATTTACAACAGACAACAGCAAAAATCAGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAACCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGATGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCGACAAGACGTTCCGGTAACTCCGCCGTTTACGATCCATCGGCGGCGGATTCCGCCCTGTTGCAGGAGGATTCCTCCGTCTCGGTGGGGGACGAGGAATTCGAACCCAATTCTCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAAGGATATTGTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACAAGCGAAATTGACATACTGCCGGATGGCTATAGATGGAGGAAATACGGACAAAAAGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGCGAGCGGCCAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAACAGCACGTGGCAGCGGTGGCGGTGGCTATAATGCCATCAACCGACCTATACCGACCAACATTCCAATGCCGGTGAGGCCATCCGCCATCGCTAGTCACTCTTTCCCGGCAAATTTTCCGTCCACGTTCCAGCCGGGAAATTTAGCCATGTCAGAAATAGGAGCACAAGCAATATCATCATTCCCATTTCAAACATCAGAAGGAGTGCTTCCAAGTTTCCAAGTTTCAGGATTTGGATCAGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCAACTCATTTCTATCTTAG 1431 44.93 MNNINQTINTLASGSSDNRTNNFGMEVAKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYEEGDQQEMKADVKNNYSASSFNPQTGSSVSSYFQSSSSNMTPLNPSGLSCDESGTKSEFVTTEMAAAESKPISQLSIYNRQQQKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSAADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPTARGSGGGGYNAINRPIPTNIPMPVRPSAIASHSFPANFPSTFQPGNLAMSEIGAQAISSFPFQTSEGVLPSFQVSGFGSAAKEEARDDIYFNSFLS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33499183 33503625 + Lsi03G022550.1 Lsi03g02255 660005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02255 476 SUPERFAMILY WRKY DNA-binding domain 165 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 ProSiteProfiles WRKY domain profile. 165 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 SUPERFAMILY WRKY DNA-binding domain 311 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 Pfam WRKY DNA -binding domain 321 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 Pfam WRKY DNA -binding domain 171 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 Gene3D WRKY domain 156 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 Gene3D WRKY domain 306 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 443 IPR044810 GO:0003700
Lsi03g02255 476 SMART WRKY_cls 319 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 SMART WRKY_cls 170 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g02255 476 MobiDBLite consensus disorder prediction 249 276 - -
Lsi03g02255 476 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 18 443 - -
Lsi03g02255 476 MobiDBLite consensus disorder prediction 277 291 - -
Lsi03g02255 476 MobiDBLite consensus disorder prediction 220 300 - -
Lsi03g02255 476 ProSiteProfiles WRKY domain profile. 314 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01215 Lsi-Chr2:15697111 Lsi03g02255 Lsi-Chr3:33499183 8.92E-119 dispersed
Lsi03g02255 Lsi-Chr3:33499183 Lsi10g01469 Lsi-Chr10:18813088 5.48E-89 dispersed
Lsi03g02255 Lsi-Chr3:33499183 Lsi11g01628 Lsi-Chr11:24630520 3.49E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25090 PF03106 WRKY 9.60E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02255 K13424 - csv:101205651 800.816