Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02273 ATGAGTTGTAACGAGAAGAATAGAGAGGTAGATGATAGGGAAATTGAGCAGCCAGTTTTGAGGAACTCTGTCGAGGCACAACGGATACCAGCCATCCAAAATGGATCCATAACGGCCCAACAGTTGACGATCGATGACAATCTTCTTGTTGACCCAAAATTGCTATTTATTGGATCGAAGATTGGCGAGGGTGCTCACGGCAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCACTTGAAAATCGTTTTGCCCGTGAAGTAAATATGATGTCCCGAGTTAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTTAGGAAGTATCTGATGAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGAGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACGGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCTTATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCGGGCGACATACCTCCCGATCTAGCATTTATAGTACAGTCGTGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTATTTACACTCCCACCTCCTTCACCATCTTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATGGTGCTATTACCGAGTTTTCTGCACGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCCAAGAACTCGCAATGA 1122 44.21 MSCNEKNREVDDREIEQPVLRNSVEAQRIPAIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERAALENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPPPSPSSPKSDTTETATTSNGAITEFSARARGKFGFLRQLFAAKRAKNSQ 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33657490 33661402 + Lsi03G022730.1 Lsi03g02273 660023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02273 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 15 352 - -
Lsi03g02273 373 MobiDBLite consensus disorder prediction 332 347 - -
Lsi03g02273 373 SMART serkin_6 55 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02273 373 PANTHER SERINE-THREONINE PROTEIN KINASE 15 352 - -
Lsi03g02273 373 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672|GO:0006468
Lsi03g02273 373 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Lsi03g02273 373 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672|GO:0006468
Lsi03g02273 373 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Lsi03g02273 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lsi03g02273 373 MobiDBLite consensus disorder prediction 326 347 - -
Lsi03g02273 373 Gene3D Transferase(Phosphotransferase) domain 1 138 343 - -
Lsi03g02273 373 ProSitePatterns Protein kinases ATP-binding region signature. 61 82 IPR017441 GO:0005524
Lsi03g02273 373 ProSiteProfiles Protein kinase domain profile. 55 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02273 373 Pfam Protein tyrosine and serine/threonine kinase 57 316 IPR001245 GO:0004672|GO:0006468
Lsi03g02273 373 CDD STKc_MAP3K-like 61 316 - -
Lsi03g02273 373 SUPERFAMILY Protein kinase-like (PK-like) 54 335 IPR011009 -
Lsi03g02273 373 Gene3D Phosphorylase Kinase; domain 1 43 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02273 Lsi-Chr3:33657490 Lsi06g01595 Lsi-Chr6:26332348 9.11E-155 dispersed
Lsi06g00176 Lsi-Chr6:1901579 Lsi03g02273 Lsi-Chr3:33657490 6.05E-07 dispersed
Lsi03g02273 Lsi-Chr3:33657490 Lsi03g01347 Lsi-Chr3:24355166 4.74E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83540 PF07714 PK_Tyr_Ser-Thr 6.10E-62 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02273 - - cmax:111481423 687.567