Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02281 ATGTTTGCATGTCTTGAGTGTTTATCATTCTCCTGGCTTACAAGAAGTAAAATGTTACTTCTTAACTGTGTGATCTTAAGTTCAAATTCCACTGTTGTGCCATTGTTTGAAAAGATGCTCAGTGCCAGTGATGCCGGTCGGATAGGTCGATTGGTTGTCCCGAAAGCCTGTGCTGAAGCATATTTCCCTCCAATCTCTCAGCCAGAGGGCCTTCCTATAAGAATTCAAGATGTTAAAGGAAAAGAGTGGGTGTTTCAATTCAGGTTTTGGCCCAATAATAATAGTAGAATGTACGTTTTGGAAGGTGTAACTCCCTGCATTCAGTCCATGCAGTTGCAAGCTGGAGACACTGTGACTTTTAGTCGCATGGATCCTGAGGGCAAACTTATTATGGGATTTCGCAAAGCATCAAGCTCTTCTATAATGCAGGATTCTCATCCATCTGCTCTTTCAACTGGCGGTCATTCGAGTGAATTTTTTTCAAGTGTTTTTGAGAATCTTCCTATTTTGAGTGGCCATTCCAGCCTTCTCCAGTCCTTAAAGGGAAACATGGATCCCCAGCTCAATTTATTGCCTGGGTACTTCAATCAACCTGGTAACGATATGAGCTGGCAAAAAGCTGAGAAGCAAGATGATAAATCAAGCGAGTGCTTGCTCCTGTCTTCAATGCTGGTACCTGAGAGGAAAAGAACTCGAAATATAGGGTCTAAAAGTAAAAGGCTGCACATTGATTGTCAGGATGCTCTGGAATTGAAACTCACATGGGAAGAGGTGCAGGATTTGCTTTGTCCACCACCTACTGTCAAACCGAGCAAGTTCATGGTTGAGGATCACGAATTTGAAGAGTATGAAGAACCTCCAGTTTTTGGGAAGAGGAGCATTTTTGTGGTCCATTCATCTCGGGGACAAGAGCAATGGGCACAGTGTGACGATTGCTCTAAATGGCGAAGATTACCTGTTGACGTACTTCTGCCCTCCAAATGGACATGCTTGGAAAACATTTGGGATCAAAGCAGGAGTTCATGTTCTGCACTTGAAGAACTGACAACAAGGGAACTGGAAAATATTCTCAGATTGAATAAGGAATTCAAAAGGCAGAGAACACTGGCTTTCAATAGACCAATCCAGGATCATGAATCCTCCGGTCTGGATGCTCTGGCGACTGCTGCAACTTTAGGAGACAATGCCAGTGATCCAGGTACTGCATCAGTTGCAACTACAACAAAGCATCCAAGGCATCGTCCTGGTTGCTCGTGCATTGTGTGCATCCAACCTCCCAGCGGAAAGGGAAAGCACAAACCTACATGCATGTGCAATGTTTGTATGACAGTTAAACGTAGATTTAAAACTTTAATGATGCGCAAAAAGAAGCGGCAATCTGAGCGTGAAGCTGAAATTGCCCAGAAGAATCAGCTTAAGTGGAGCTCTAGAGATGAAACTGAGTTGGACAACACCTCTAGGCATGTATCCCTGAACCTCGACCCCTCTGCAAATGAAGCCCAATTGATTACAAATGATTGTAAAAGCCAAAGTAATTTGGTCGAATCTGGTAAGGACCAATTAGATTTAAATTGCCATCCTGACCAAGAAAATGAAGTACAAGGGGTGTCAAACCACCGAGTGAGCATGATGAGTCTTGTTCAAATAGCAAGCCTGCCATTGGAGACATATTTGAAGCAGAATGGTCTTACAAGTTTGTTACCAGAGCTACAGGTAAGTTCAGCATCACACGCTCCAGCACAAGGTACAAATGAGATTGAAGGAGCTCTAAATGATGATGGGTGTTTTGCTTCTGCTGCTCAAGATCAAGAAAGTGAGGGAGAACAAATTTGCGGAAAAGATCAAAGCTGA 1851 43.33 MFACLECLSFSWLTRSKMLLLNCVILSSNSTVVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASSSSIMQDSHPSALSTGGHSSEFFSSVFENLPILSGHSSLLQSLKGNMDPQLNLLPGYFNQPGNDMSWQKAEKQDDKSSECLLLSSMLVPERKRTRNIGSKSKRLHIDCQDALELKLTWEEVQDLLCPPPTVKPSKFMVEDHEFEEYEEPPVFGKRSIFVVHSSRGQEQWAQCDDCSKWRRLPVDVLLPSKWTCLENIWDQSRSSCSALEELTTRELENILRLNKEFKRQRTLAFNRPIQDHESSGLDALATAATLGDNASDPGTASVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCMCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLKWSSRDETELDNTSRHVSLNLDPSANEAQLITNDCKSQSNLVESGKDQLDLNCHPDQENEVQGVSNHRVSMMSLVQIASLPLETYLKQNGLTSLLPELQVSSASHAPAQGTNEIEGALNDDGCFASAAQDQESEGEQICGKDQS 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33688348 33692567 - Lsi03G022810.1 Lsi03g02281 660031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02281 616 Pfam B3 DNA binding domain 36 135 IPR003340 GO:0003677
Lsi03g02281 616 SUPERFAMILY DNA-binding pseudobarrel domain 33 135 IPR015300 -
Lsi03g02281 616 Gene3D - 303 359 - -
Lsi03g02281 616 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 27 572 - -
Lsi03g02281 616 CDD B3_DNA 34 135 IPR003340 GO:0003677
Lsi03g02281 616 ProSiteProfiles B3 DNA-binding domain profile. 36 137 IPR003340 GO:0003677
Lsi03g02281 616 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 27 572 - -
Lsi03g02281 616 MobiDBLite consensus disorder prediction 578 616 - -
Lsi03g02281 616 Gene3D - 22 140 IPR015300 -
Lsi03g02281 616 SMART B3_2 36 137 IPR003340 GO:0003677
Lsi03g02281 616 Pfam CW-type Zinc Finger 305 347 IPR011124 GO:0008270
Lsi03g02281 616 ProSiteProfiles Zinc finger CW-type profile. 300 350 IPR011124 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01207 Lsi-Chr2:15495084 Lsi03g02281 Lsi-Chr3:33688348 0 dispersed
Lsi02g02064 Lsi-Chr2:26810462 Lsi03g02281 Lsi-Chr3:33688348 2.91E-15 dispersed
Lsi03g02281 Lsi-Chr3:33688348 Lsi09g01706 Lsi-Chr9:25589090 3.02E-14 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25092 PF02362 B3 1.30E-15 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02281 - - bhj:120090949 1130.55