Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g02285 ATGCTTTTCAAACTATTCCTCATTCTTGTCCTAGCTCTAACTCCTGCTTCCGTTTCTGCTTTGGACACTGTTTTCAACGATGACATTCTGGGATTAATAGTGTTCAAAGCTGGCCTTCAGGATCCTATGGGTAAACTGGTCACATGGAATGGAGACGATGAAACTCCCTGCAACTGGTGTGGTGTCAAATGCAATCCTAAAACCAACAGGGTCTCTGAGCTTGTCCTTGATGGATTCTCTTTGTCCGGTCACATCGATCGTGGACTCCTGAGGTTACAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCACAATCAACTCTGCTCTTTCTCACCTTGGAAATTTGCAAGTCATTGATTTCAGTGACAACAGTTTATCTGGACCCATTCCTGAACAGCTTTTCCAGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAACATCCCCCAATCCTTGACCTCTTGCTTCTCTCTTGAGCTTCTCAACTTCTCCTCCAACCACCTCTCTGGGAAATTACCTTCTGGGTTATGGTATTTGAGGGGGCTTCAATCTCTGGATTTCTCTGACAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTACACAAGAATCGTTTTTCTGGAAAGCTTCCCGAGGATATTGGTGGTTGCTTACTTCTAAAATCAATTGATTTTAGTGACAATATCCATTCTGGGGGTCTTCCAGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCGCGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACCTTAGATCTTTCTGCCAATAATTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTGTTGAAGAAGTTCAATGTATCCACGAACTATTTAACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCATTTGACTGGAAATCTCCCTACATGGATCTTTAGGGCAGCTATGCCTAGTGATCCATTTTCTTCGTACAGACTGGGAGAAAACCTTTCATCTCCGGCCCTTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAACATATCAAGAAACCATCTCGTGGGTTCTATTCCAGGGAGAATTGGTGAACTAAAATCAGCATATGCTATTGACTTCAGTGACAATCAATTAAATGGAAGTATTCCAGATGAAATTGGAGGAGCAATCTCACTCAAGGAGTTGAGGCTGGAGAAGAACTACCTCACTGGGGAAATCCCAGTCAAGATTGGCAAATGCTCGTTGTTAACATCATTGATTCTTTCTCACAACAACCTCACAGGCTCAATTCCTGCTGCCGTTGCAAATCTCTCCAACCTTGAAGATGTAGACTTGTCTTTCAACAAACTGTCCAGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCATTTCCTTTAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGGGGATTCTTCAACACCATATCTCCCTTGTCTATATCACATAACCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGCCCCTCTGTCCATCCAAAACCGATCGTCCTAAACCCAAATTCTTCTGATACCAATGCAAATTCCCCCTCCAACAAGCATCATCATGAGATCATACTCAGCATATCTTCCATTATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCCGAGCAAGGTCCTCACAATCACGGTCTGCTGCTCTTGTATTATCTGCCGGGGAGGATTTTAGCTGCTCCCCAAAAACTAATCCAAACTACGGAAAGCTCGTCATGTTTGCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGAATTGCTGAACAAGGACTGTGAACTCGGTCGAGGTGGATTTGGGGTTGTTTACAAAACAGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAATTGACTGTCACAAGCCTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAAACATCACAATCTTGTGGCACTCGAAGGGTATTACTGGACAACCTCCTTACAGCTCCTCATTTATGAATATGTCCCCAATGGAAGTTTGTATAAACATCTACATGATGGAACCGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAATATCATTCATTACAACTTGAAGTCAACTAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTGGGGGACTATGGTTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGCATCTTAGTTTTGGAAGTGGTGACAGGACAAAGACCTGTTGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATTGTGAGGGTAGCTTTGGATGAAGGCACGGTGGAGCAATGTGTTGATGAGAGGCTCCGATCGAACTTCCGCATTGAAGAGGCCATTCCTGTAATGAAACTGGGTTTGATATGTGCATCTCAAGTACCATCGAACAGGCCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCCCACTCTGAAGTTGACGAGGAGTTGGAATGA 2883 43.01 MLFKLFLILVLALTPASVSALDTVFNDDILGLIVFKAGLQDPMGKLVTWNGDDETPCNWCGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALSHLGNLQVIDFSDNSLSGPIPEQLFQQCGSIRVLSFARNNLIGNIPQSLTSCFSLELLNFSSNHLSGKLPSGLWYLRGLQSLDFSDNLLEGQIPPGIQNLYDLRFVSLHKNRFSGKLPEDIGGCLLLKSIDFSDNIHSGGLPESMQMLSSCTYLNLRGNSLAGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQLLKKFNVSTNYLTGNLPESMANCNNLLSIDASHNHLTGNLPTWIFRAAMPSDPFSSYRLGENLSSPALFQGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNHLVGSIPGRIGELKSAYAIDFSDNQLNGSIPDEIGGAISLKELRLEKNYLTGEIPVKIGKCSLLTSLILSHNNLTGSIPAAVANLSNLEDVDLSFNKLSRSLPKELTNLSHLISFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNANSPSNKHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALVLSAGEDFSCSPKTNPNYGKLVMFAGDAEFVVGAQELLNKDCELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIKHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDGTGDNCLSWRQRFKIVLGMAKGLAYLHHNNIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGQRPVEYMEDDVIVLCDIVRVALDEGTVEQCVDERLRSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSHSEVDEELE 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33709382 33713441 - Lsi03G022850.1 Lsi03g02285 660035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g02285 960 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 6 951 - -
Lsi03g02285 960 Gene3D Transferase(Phosphotransferase) domain 1 754 959 - -
Lsi03g02285 960 Gene3D Ribonuclease Inhibitor 255 365 IPR032675 -
Lsi03g02285 960 SUPERFAMILY L domain-like 380 562 - -
Lsi03g02285 960 Gene3D Ribonuclease Inhibitor 30 141 IPR032675 -
Lsi03g02285 960 SUPERFAMILY Protein kinase-like (PK-like) 679 953 IPR011009 -
Lsi03g02285 960 Gene3D Phosphorylase Kinase; domain 1 666 753 - -
Lsi03g02285 960 SMART LRR_typ_2 92 115 IPR003591 -
Lsi03g02285 960 SMART LRR_typ_2 403 427 IPR003591 -
Lsi03g02285 960 SMART LRR_typ_2 499 522 IPR003591 -
Lsi03g02285 960 SMART LRR_typ_2 189 212 IPR003591 -
Lsi03g02285 960 SMART LRR_typ_2 523 547 IPR003591 -
Lsi03g02285 960 SMART LRR_typ_2 285 309 IPR003591 -
Lsi03g02285 960 SMART LRR_typ_2 213 237 IPR003591 -
Lsi03g02285 960 SMART LRR_typ_2 116 140 IPR003591 -
Lsi03g02285 960 ProSiteProfiles Protein kinase domain profile. 677 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g02285 960 Pfam Leucine rich repeat 478 536 IPR001611 GO:0005515
Lsi03g02285 960 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Lsi03g02285 960 Gene3D Ribonuclease Inhibitor 142 254 IPR032675 -
Lsi03g02285 960 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524
Lsi03g02285 960 SUPERFAMILY L domain-like 46 354 - -
Lsi03g02285 960 Pfam Protein tyrosine and serine/threonine kinase 679 945 IPR001245 GO:0004672|GO:0006468
Lsi03g02285 960 CDD STKc_IRAK 683 949 - -
Lsi03g02285 960 Gene3D Ribonuclease Inhibitor 366 572 IPR032675 -
Lsi03g02285 960 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lsi03g02285 960 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 951 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00148 Lsi-Chr3:2098372 Lsi03g02285 Lsi-Chr3:33709382 4.44E-17 dispersed
Lsi03g02285 Lsi-Chr3:33709382 Lsi04g01017 Lsi-Chr4:11513909 0 dispersed
Lsi03g02285 Lsi-Chr3:33709382 Lsi03g00261 Lsi-Chr3:3236746 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83542 PF07714 PK_Tyr_Ser-Thr 3.10E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g02285 - - csv:101222148 1724.14